Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23]
367 sequences; 31,780,469 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq23 125 8e-24
>seq23
Length=461238
Score = 125 bits (138), Expect = 8e-24
Identities = 145/193 (75%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||||||||||||||| |||| |||||| || | || || ||||| |||||||||||
Sbjct 205056 CTCCTTTTGAATATTGTAGTCAGACAGAGTACGGCCATCTTCGAGCTGTTTACCAGCGAA 204997
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 43110
|| || ||||||||||| | || | || |||||||||| ||| |||| || ||||
Sbjct 204996 GATCAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCC-TGAATTTTGGTCTTGACGT 204938
Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | || || || || || || | ||||||||| || || || || ||||| |
Sbjct 204937 TATCGATGGTATCAGATGACTCGACCTCAAGCGTGATGGTCTTTCCAGTCAGAGTCTTGA 204878
Query 43171 CAAAGATTTGCAT 43183
| ||||| |||||
Sbjct 204877 CGAAGATCTGCAT 204865
Score = 102 bits (112), Expect = 9e-17
Identities = 123/165 (75%), Gaps = 2/165 (1%)
Strand=Plus/Minus
Query 42996 TTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATG 43055
|| ||||| ||||| || | |||||| || |||| || ||||| ||||||||||| ||
Sbjct 204650 TTCTGAATGTTGTAGTCGGACAGAGTGCGGCCGTCTTCGAGCTGTTTACCAGCGAAGATC 204591
Query 43056 AGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-C 43114
|| ||||||||||| | || | || |||||||||| ||| | || || | | | | | |
Sbjct 204590 AGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCC-TGAATCTTGGTCTTAACATTGTC 204532
Query 43115 CACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 43159
| |||||| ||| || || |||| |||||||| ||||| ||
Sbjct 204531 GATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGT 204487
Score = 100 bits (110), Expect = 3e-16
Identities = 154/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||| | |||||| |||| || |||||||||||| ||||| || | ||| || || |
Sbjct 205308 ACGGAGCACCAAGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCTGACAGCGTGCGACC 205249
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
|| || || |||||||||||||| || | |||||||| || | || | | ||||||
Sbjct 205248 ATCCTCCAGTTGCTTACCAGCGAAGATCAAGCGCTGCTGATCTGGTGGAATACCCTCCTT 205189
Query 43088 GTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146
|| | ||| | || || || | | | | |||||| ||||| || || | ||||
Sbjct 205188 GT-CTTGAATCTTGGTCTTCACATTGTCAATCGTGTCTGAGGATTCAACTTCTAGGGTGA 205130
Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
| || || || || |||||||| || || ||||||||
Sbjct 205129 TCGTCTTTCCTGTGAGCGTCTTCACGAAAATTTGCAT 205093
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571814976786760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |