Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq23 125 8e-24 >seq23 Length=461238 Score = 125 bits (138), Expect = 8e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||||||||||||||| |||| |||||| || | || || ||||| ||||||||||| Sbjct 205056 CTCCTTTTGAATATTGTAGTCAGACAGAGTACGGCCATCTTCGAGCTGTTTACCAGCGAA 204997 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 43110 || || ||||||||||| | || | || |||||||||| ||| |||| || |||| Sbjct 204996 GATCAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCC-TGAATTTTGGTCTTGACGT 204938 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || || || || || || | ||||||||| || || || || ||||| | Sbjct 204937 TATCGATGGTATCAGATGACTCGACCTCAAGCGTGATGGTCTTTCCAGTCAGAGTCTTGA 204878 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 204877 CGAAGATCTGCAT 204865 Score = 102 bits (112), Expect = 9e-17 Identities = 123/165 (75%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 42996 TTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATG 43055 || ||||| ||||| || | |||||| || |||| || ||||| ||||||||||| || Sbjct 204650 TTCTGAATGTTGTAGTCGGACAGAGTGCGGCCGTCTTCGAGCTGTTTACCAGCGAAGATC 204591 Query 43056 AGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-C 43114 || ||||||||||| | || | || |||||||||| ||| | || || | | | | | | Sbjct 204590 AGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCC-TGAATCTTGGTCTTAACATTGTC 204532 Query 43115 CACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 43159 | |||||| ||| || || |||| |||||||| ||||| || Sbjct 204531 GATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGT 204487 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| |||| || |||||||||||| ||||| || | ||| || || | Sbjct 205308 ACGGAGCACCAAGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCTGACAGCGTGCGACC 205249 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || || |||||||||||||| || | |||||||| || | || | | |||||| Sbjct 205248 ATCCTCCAGTTGCTTACCAGCGAAGATCAAGCGCTGCTGATCTGGTGGAATACCCTCCTT 205189 Query 43088 GTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 || | ||| | || || || | | | | |||||| ||||| || || | |||| Sbjct 205188 GT-CTTGAATCTTGGTCTTCACATTGTCAATCGTGTCTGAGGATTCAACTTCTAGGGTGA 205130 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || || || |||||||| || || |||||||| Sbjct 205129 TCGTCTTTCCTGTGAGCGTCTTCACGAAAATTTGCAT 205093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571814976786760