Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq23 107 2e-18 seq9 84.2 2e-11 >seq23 Length=461238 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| || |||||| |||||||||||||| ||| |||| | || ||| Sbjct 205301 ACCAAGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCTGACAGCGTGCGACCATCCTCC 205242 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || || ||||| ||||| ||||| || || || || | |||||||||||| | Sbjct 205241 AGTTGCTTACCAGCGAAGATCAAGCGCTGCTGATCTGGTGGAATACCCTCCTTGTCTTGA 205182 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | |||| || || || | ||| |||||||| Sbjct 205181 ATCTTGGTCTTCACATTGTCAATCGTGTCTGAGGATTCAACTTCTAGGGTGATCGTCTTT 205122 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || |||||||| || |||||||| Sbjct 205121 CCTGTGAGCGTCTTCACGAAAATTTGCAT 205093 Score = 87.8 bits (96), Expect = 1e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 45149 TTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATC 45208 |||||||||||||||||| ||| ||| |||| || || ||||| || ||||| ||| Sbjct 204650 TTCTGAATGTTGTAGTCGGACAGAGTGCGGCCGTCTTCGAGCTGTTTACCAGCGAAGATC 204591 Query 45209 AACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCC 45268 | ||||| ||||| || || | |||||||||||| ||| || |||||| | Sbjct 204590 AGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGAATCTTGGTCTTAACATTGTCG 204531 Query 45269 ACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCA 45314 | | |||| ||| ||||| | ||| || |||||||| |||| Sbjct 204530 ATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGTCA 204485 >seq9 Length=905162 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||||||||| |||||| || |||||||||||| || ||| | || || ||||| Sbjct 60880 GTGCAGCGTCGACTCCTTTTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCAAGTTG 60821 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 || |||||||| || | ||||| |||||||| || | |||||||||||| Sbjct 60820 CTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGTGGAATACCCTCCTTGTC 60770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395073432902707