Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23]
367 sequences; 31,780,469 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq10 387 1e-102
seq15 158 1e-33
seq23 100 3e-16
>seq10
Length=848763
Score = 387 bits (428), Expect = 1e-102
Identities = 1215/1856 (65%), Gaps = 44/1856 (2%)
Strand=Plus/Plus
Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204
|| || ||||| |||||||| ||||| ||||| | |||||| | ||||| || ||
Sbjct 459652 GTACGCAGATAGTACATGCCAGTCTTGAGACCGAGCTTCCAGCCAGCGAAATGCATGGAG 459711
Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264
|| | || || | || | ||||| | |||| ||||| || || ||
Sbjct 459712 GTGATCTTGCCCATCGTTGGTTCCTTCATGTGGATGTTGAGAGACTGGGATTGGTCAATG 459771
Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCA-ATGTACGCATCGAC--ATTTCCCATACG 22321
||||| || |||||||||||||| | || | ||| || | | | |||||||| ||
Sbjct 459772 AACGCGCCACGATCGGCGGCCATCTGGATGACATG---GCGTTGGCTTATTTCCCAGACC 459828
Query 22322 GTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGA-TCCTCTGGACGGACCCGTT 22380
|||||||||| | | || || || || | || || | | ||| | || ||
Sbjct 459829 GTCTTGTACAATGCTTTAATATCATCTGGAAT-GTTTGGAATGCGCTGAATCGAACCACC 459887
Query 22381 ATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTT 22440
| ||||| || || || | || ||||||||| ||| | | ||||||
Sbjct 459888 CTCCGCAATGATGCGGTTCTTCATATTGTCAGACCACAAACCCATGTCAACGAGATCTTT 459947
Query 22441 GACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTT 22500
|| || | | || || || || |||||||||| | ||||| ||| ||| |||||
Sbjct 459948 GAGCAACCAAGGATTGACGACCTGGAACTCGCCGGCGAGCACGCGACGTGAGTAGATGTT 460007
Query 22501 GGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGG 22560
|| || | || ||||| | || ||||| ||||| ||||||| || |||||||| ||
Sbjct 460008 TGAGGTATATGGCTCGAAGCACTCGTTGTTACCCAGGATCTGAGAAGTTGAAGCGGTTGG 460067
Query 22561 CATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCAT 22620
||| ||||||| |||| ||||| | | || |||||| || | | ||||| |
Sbjct 460068 CATGGGCGCCACGAGTAAGGAGTTGCGGACACCATGCTTTTTGATCTCAGCTTTGAGGCT 460127
Query 22621 CGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCC 22680
||||||||| ||||| | || ||||| || |||||| || || ||||| | ||
Sbjct 460128 GTCCCAGTCCCAGAGATCAGTTGGAGTCACGTT---CCACATGTCATACTGCAAAATCCC 460184
Query 22681 --GCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCG 22738
| ||| || || ||| || || | || ||||| | |||||| ||
Sbjct 460185 CTGGGACACG--GGCGAGCCCTCATAACTCGAATAGGGACCTTGCTCTTTGGCAAGCTCA 460242
Query 22739 CAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCA--ATTCG- 22795
|| || || ||| ||| ||||| || || ||||||| |||||| || ||
Sbjct 460243 CACGAAGCTGTCAGAGCGGCGTGGTATATGGTTTCAAAGATTTGGATGTTCAGCATACGA 460302
Query 22796 GCGGC-GGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTG 22854
|| | || || ||| | |||| |||| | ||| || || || | ||||||
Sbjct 460303 GCCTCTGGAGAG----TCGAATGGCAGCCGCAGAGCGAGGAAAGCATCGGCAAGACCCTG 460358
Query 22855 AACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTT--TGCCTCGGGCAAAGGA 22912
|| || | |||||| || |||| | ||| || || || |||||| || | |||
Sbjct 460359 CACACCGACACCGATAGGACGGTGTCTCATGTT--ACTGTTACGTGCCTCTGGTACAGGG 460416
Query 22913 TACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNN 22972
|| || ||||| | |||||||||| | ||| || |
Sbjct 460417 TAGTGGTTAATGTCGATGATCTTGTTCAAGTTGCGAACGACATGGCGGGTGACCTCATGC 460476
Query 22973 NNNNNNTCAAAGTCGTAAACGCC-CGATTGTACA---ACAAACTTGTTGACGGCG--ATC 23026
| |||||||| |||| || || ||| ||||| |||| | | | |
Sbjct 460477 AGCTTCTTGAAGTCGTATTCGCCACGCATG-ACATCGACAAAG--GTTGGCAGAGCCAGA 460533
Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086
||||| | || || || || ||||||||| || |||||||| | || ||||| ||
Sbjct 460534 GAGGCCAAGTTACACACCGCGACCTCGTCTGGGGCAGTGTACTCAATGATCTCGGTGCAA 460593
Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146
|| ||| | || || |||| || |||||||||| || || ||||| | |||
Sbjct 460594 AGGTTGGAGCTGCGGATGGTTCCCAGGTTTTTCTGGTTGCTCTTGCGGTTGCAAGCGTCC 460653
Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206
|||||||||||| | || |||| |||||| ||| | || | || || |||||
Sbjct 460654 TTGTAGAGCATGAAGGGATTGCCAGTCTCGGTCTGTGCCTGAAGAATGGCATACCACAGC 460713
Query 23207 GTCTGAGCGTGAACACGTCGCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAACGC 23265
||||||| | | ||| |||| | | ||| || | |||||| || | ||| | ||
Sbjct 460714 TTCTGAGCACGGATG-GTCTCACGACCACGGCCCTCCTTCTCGTATTTCTCGTATAGGGC 460772
Query 23266 GTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGAC 23324
||||| || | ||||| ||| ||||| ||||| || | || | ||||| | |||
Sbjct 460773 CTCAAACTCTTCGCCGTAGACA-TCGGCGAGGCCAGGTGCTTCATTGGGACAGAAGAGTG 460831
Query 23325 TCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGA 23384
||||||| | | |||||| ||| |||| || ||||| || |||| | ||| ||||
Sbjct 460832 TCCACATACCATTCTGTTCAACTCGTTTCATGAACAGATCAGGCGTCCACAAAGCATAGA 460891
Query 23385 ACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCA 23444
| || || || || || ||| || || ||| |||||| ||| || | || | |
Sbjct 460892 AGAGATCACGAGCACGGTTCTCTTCCTTACCGTGGTTCTTGCGCAAGTCAAGCCAGCCAA 460951
Query 23445 ACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGC 23504
| | ||| |||||||| ||||| ||||||| ||| || || || || | ||| ||||| |
Sbjct 460952 AAATGTCAGCATGCCATGGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTTGCCAC 461011
Query 23505 CCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGG 23564
||||||| || || || || ||| | ||| || | | ||| || | ||||||||||
Sbjct 461012 CCTGATCAACATATCGAGCGGTGGCATCGTAGACACGCAACATAGGAATTAGACCGTTGG 461071
Query 23565 ACGCGCCGCCTACGCCCGCCACACT-CGAACCTTTTGCTCGAACGTTGTGAACGTGGAAA 23623
| | |||| | || ||| | |||||| | || |||| | ||| |||| | |
Sbjct 461072 ATGTGCCGT-TGGTACCACCAATGTACGAACCAGTCGCACGAATGCGGTGTACGTTCAGA 461130
Query 23624 CCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCC 23683
|| ||||| ||| | | || || ||||| || || || || |||||||||||||||
Sbjct 461131 CCGATGCCACCGGCAGTCTTTGAAATCATAGCACAGGTCTTGAGCGTGTCGTAGATGCCC 461190
Query 23684 TCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTA 23743
|| ||||||||||| || | ||| | ||| || || || | |||| |||||
Sbjct 461191 TCTATGCTGTCCTCCTTCATATCGATGAGGAAGCAGGAGGAGAGCTGCGGCGACGGCGTG 461250
Query 23744 GCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACAT-TAGATTGTA 23802
| || ||||| || || ||||| || ||||| ||||||||| ||| | |||
Sbjct 461251 CCAGCATTAAACAGAGTGGGAGACGCGTGTGTGAAGTACTTATTCGACATGTAG-TCGTA 461309
Query 23803 CGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCAT 23862
|| || ||||| |||||||| || |||||||| || | || || ||||| |||||
Sbjct 461310 AGTCTCAATGGCACTCTCAATGTCTTCACCGTGTATGCCAACCGCAACACGCATAATCAT 461369
Query 23863 GTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGT 23922
|| || |||||||| || ||| || ||| || || || || | | || ||
Sbjct 461370 GTGCTGTGGTCTCTCTGCCACCTTGCCATTGATTCGGAGAAGGTAGGACCTCTCCAATGT 461429
Query 23923 TTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCA 23978
||| || |||||||| | ||||| |||||||| |||| || |||||||| ||||
Sbjct 461430 TTTGAAGCCAAAATACTGGTAGTTGAAGTCACGGTCGTAAACGATGGCCGAGTTCA 461485
>seq15
Length=603150
Score = 158 bits (174), Expect = 1e-33
Identities = 327/480 (68%), Gaps = 20/480 (4%)
Strand=Plus/Plus
Query 57958 CCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCA 58017
|||| |||||| | || ||||| ||||| ||||| || || || ||||| || ||
Sbjct 375897 CCACCTTCGCCTCACGCCTCATCGCCTTCGCTGCCGTGGAGGGCATCTTCTTCTCTGGTG 375956
Query 58018 GCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCA 58077
|||||| | || || ||| | ||||| || || || ||||| ||| |||| || ||
Sbjct 375957 CCTTTGCTTCCATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCGGGCTTGACCTTCTCCA 376016
Query 58078 ACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTC 58137
||||| | || || |||||||||||| | || || || || || ||||| | | |
Sbjct 376017 ACGAGCTCATTTCACGCGACGAGGGTATGCACACCGACTTCGCCTGCCTGCTCTTCAGCA 376076
Query 58138 ACATTGTCAATAAACCGACGCGGGA-TCGCATCTTGGACATTATCACCGAGGCGGTCGCG 58196
||| ||||| ||| | | || ||| | | | ||| ||||||||||| ||| |
Sbjct 376077 TGATTCAAAATAAGCCGTCTCCAGAGTCGGTGCGT-GCCATCATCACCGAGGCTGTCTCC 376135
Query 58197 ATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGC-CATGCTCGGTATGAACAATGA 58255
||||| || ||||| ||||||||||||| || || | | ||||||||||||| ||
Sbjct 376136 ATCGAGAAAGAGTTCCTCACCGAAGCCCTGCC-TTGCCGCCTGCTCGGTATGAATGCAGA 376194
Query 58256 TTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAG---ACTTTTG---CTCG--AACTG 58307
| |||| |||||||||||||||| || ||| | || || |||| |||
Sbjct 376195 CCTTATGTGCCAGTACATTGAGTTTGTAGCAGACCGCTTGCTCATGGCTCTCGGCAACAC 376254
Query 58308 ATTGGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTC 58367
| || | |||||| ||| || ||||| || || ||| | ||||||||
Sbjct 376255 AAAGGTG--------TACAACGCGACGAACCCGTTCGACTTCATGGAGAACATCTCGCTG 376306
Query 58368 GAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATG 58427
| ||||||||||| || ||||| || ||| |||| || || || ||| || |||
Sbjct 376307 GCAGGCAAGACAAATTTCTTCGAGAAGCGCGTTGGCGACTACCAGAAGGCCGGTGTCATG 376366
>seq23
Length=461238
Score = 100 bits (110), Expect = 3e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| ||||| || ||||| || ||||||||| | || |||||| | ||
Sbjct 205093 ATGCAAATTTTCGTGAAGACGCTCACAGGAAAGACGATCACCCTAGAAGTTGAATCCTCA 205152
Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | || | || || || || || |||||||| || | || || || ||
Sbjct 205153 GACACGATTGACAATGTGAAGACCAAG-ATTCAAGACAAGGAGGGTATTCCACCAGATCA 205211
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||||| | || |||||||| || || |||| || | || || || || ||
Sbjct 205212 GCAGCGCTTGATCTTCGCTGGTAAGCAACTGGAGGATGGTCGCACGCTGTCAGACTACAA 205271
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420
||||||||| || |||||||| || |||| || | || | ||||||
Sbjct 205272 CATTCAAAAGGAGTCGACTCTGCACTTGGTGCTCCGTCTCCGTGGCGGT 205320
Score = 98.7 bits (108), Expect = 9e-16
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||||||||| || || || ||||| | || || || | ||
Sbjct 204865 ATGCAGATCTTCGTCAAGACTCTGACTGGAAAGACCATCACGCTTGAGGTCGAGTCATCT 204924
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | |||| | ||||| | ||| ||||||||| ||| | || || ||||||
Sbjct 204925 GATACCATCGATAACGTCAAGACCAAAATTCAGGACAAGGAGGGCATCCCACCAGACCAG 204984
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||||| || || |||||||| |||||| | ||||| ||| || || || ||
Sbjct 204985 CAGCGCCTGATCTTCGCTGGTAAACAGCTCGAAGATGGCCGTACTCTGTCTGACTACAAT 205044
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|||||||| || || ||||| || || || ||
Sbjct 205045 ATTCAAAAGGAGTCTACTCTGCACCTTGTGCT 205076
Score = 91.5 bits (100), Expect = 1e-13
Identities = 122/167 (73%), Gaps = 2/167 (1%)
Strand=Plus/Plus
Query 31215 TGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAA-A 31273
|||| ||||| || |||||| |||| || || ||||||||| |||| | || || |
Sbjct 204485 TGACTGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCGACACCATCGACAATGTTAAGA 204544
Query 31274 CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGC 31333
| ||| | ||||||||| ||| | || || ||||||||||| || || ||||||||
Sbjct 204545 CCAAGATTCA-GGACAAGGAGGGCATCCCACCAGACCAGCAGCGCCTGATCTTCGCTGGT 204603
Query 31334 AAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAA 31380
|||||| | |||||| ||| || ||| || |||||||| ||
Sbjct 204604 AAACAGCTCGAAGACGGCCGCACTCTGTCCGACTACAACATTCAGAA 204650
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445764355046640
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