Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq10 387 1e-102 seq15 158 1e-33 seq23 100 3e-16 >seq10 Length=848763 Score = 387 bits (428), Expect = 1e-102 Identities = 1215/1856 (65%), Gaps = 44/1856 (2%) Strand=Plus/Plus Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204 || || ||||| |||||||| ||||| ||||| | |||||| | ||||| || || Sbjct 459652 GTACGCAGATAGTACATGCCAGTCTTGAGACCGAGCTTCCAGCCAGCGAAATGCATGGAG 459711 Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264 || | || || | || | ||||| | |||| ||||| || || || Sbjct 459712 GTGATCTTGCCCATCGTTGGTTCCTTCATGTGGATGTTGAGAGACTGGGATTGGTCAATG 459771 Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCA-ATGTACGCATCGAC--ATTTCCCATACG 22321 ||||| || |||||||||||||| | || | ||| || | | | |||||||| || Sbjct 459772 AACGCGCCACGATCGGCGGCCATCTGGATGACATG---GCGTTGGCTTATTTCCCAGACC 459828 Query 22322 GTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGA-TCCTCTGGACGGACCCGTT 22380 |||||||||| | | || || || || | || || | | ||| | || || Sbjct 459829 GTCTTGTACAATGCTTTAATATCATCTGGAAT-GTTTGGAATGCGCTGAATCGAACCACC 459887 Query 22381 ATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTT 22440 | ||||| || || || | || ||||||||| ||| | | |||||| Sbjct 459888 CTCCGCAATGATGCGGTTCTTCATATTGTCAGACCACAAACCCATGTCAACGAGATCTTT 459947 Query 22441 GACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTT 22500 || || | | || || || || |||||||||| | ||||| ||| ||| ||||| Sbjct 459948 GAGCAACCAAGGATTGACGACCTGGAACTCGCCGGCGAGCACGCGACGTGAGTAGATGTT 460007 Query 22501 GGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGG 22560 || || | || ||||| | || ||||| ||||| ||||||| || |||||||| || Sbjct 460008 TGAGGTATATGGCTCGAAGCACTCGTTGTTACCCAGGATCTGAGAAGTTGAAGCGGTTGG 460067 Query 22561 CATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCAT 22620 ||| ||||||| |||| ||||| | | || |||||| || | | ||||| | Sbjct 460068 CATGGGCGCCACGAGTAAGGAGTTGCGGACACCATGCTTTTTGATCTCAGCTTTGAGGCT 460127 Query 22621 CGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCC 22680 ||||||||| ||||| | || ||||| || |||||| || || ||||| | || Sbjct 460128 GTCCCAGTCCCAGAGATCAGTTGGAGTCACGTT---CCACATGTCATACTGCAAAATCCC 460184 Query 22681 --GCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCG 22738 | ||| || || ||| || || | || ||||| | |||||| || Sbjct 460185 CTGGGACACG--GGCGAGCCCTCATAACTCGAATAGGGACCTTGCTCTTTGGCAAGCTCA 460242 Query 22739 CAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCA--ATTCG- 22795 || || || ||| ||| ||||| || || ||||||| |||||| || || Sbjct 460243 CACGAAGCTGTCAGAGCGGCGTGGTATATGGTTTCAAAGATTTGGATGTTCAGCATACGA 460302 Query 22796 GCGGC-GGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTG 22854 || | || || ||| | |||| |||| | ||| || || || | |||||| Sbjct 460303 GCCTCTGGAGAG----TCGAATGGCAGCCGCAGAGCGAGGAAAGCATCGGCAAGACCCTG 460358 Query 22855 AACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTT--TGCCTCGGGCAAAGGA 22912 || || | |||||| || |||| | ||| || || || |||||| || | ||| Sbjct 460359 CACACCGACACCGATAGGACGGTGTCTCATGTT--ACTGTTACGTGCCTCTGGTACAGGG 460416 Query 22913 TACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNN 22972 || || ||||| | |||||||||| | ||| || | Sbjct 460417 TAGTGGTTAATGTCGATGATCTTGTTCAAGTTGCGAACGACATGGCGGGTGACCTCATGC 460476 Query 22973 NNNNNNTCAAAGTCGTAAACGCC-CGATTGTACA---ACAAACTTGTTGACGGCG--ATC 23026 | |||||||| |||| || || ||| ||||| |||| | | | | Sbjct 460477 AGCTTCTTGAAGTCGTATTCGCCACGCATG-ACATCGACAAAG--GTTGGCAGAGCCAGA 460533 Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 ||||| | || || || || ||||||||| || |||||||| | || ||||| || Sbjct 460534 GAGGCCAAGTTACACACCGCGACCTCGTCTGGGGCAGTGTACTCAATGATCTCGGTGCAA 460593 Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146 || ||| | || || |||| || |||||||||| || || ||||| | ||| Sbjct 460594 AGGTTGGAGCTGCGGATGGTTCCCAGGTTTTTCTGGTTGCTCTTGCGGTTGCAAGCGTCC 460653 Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206 |||||||||||| | || |||| |||||| ||| | || | || || ||||| Sbjct 460654 TTGTAGAGCATGAAGGGATTGCCAGTCTCGGTCTGTGCCTGAAGAATGGCATACCACAGC 460713 Query 23207 GTCTGAGCGTGAACACGTCGCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAACGC 23265 ||||||| | | ||| |||| | | ||| || | |||||| || | ||| | || Sbjct 460714 TTCTGAGCACGGATG-GTCTCACGACCACGGCCCTCCTTCTCGTATTTCTCGTATAGGGC 460772 Query 23266 GTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGAC 23324 ||||| || | ||||| ||| ||||| ||||| || | || | ||||| | ||| Sbjct 460773 CTCAAACTCTTCGCCGTAGACA-TCGGCGAGGCCAGGTGCTTCATTGGGACAGAAGAGTG 460831 Query 23325 TCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGA 23384 ||||||| | | |||||| ||| |||| || ||||| || |||| | ||| |||| Sbjct 460832 TCCACATACCATTCTGTTCAACTCGTTTCATGAACAGATCAGGCGTCCACAAAGCATAGA 460891 Query 23385 ACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCA 23444 | || || || || || ||| || || ||| |||||| ||| || | || | | Sbjct 460892 AGAGATCACGAGCACGGTTCTCTTCCTTACCGTGGTTCTTGCGCAAGTCAAGCCAGCCAA 460951 Query 23445 ACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGC 23504 | | ||| |||||||| ||||| ||||||| ||| || || || || | ||| ||||| | Sbjct 460952 AAATGTCAGCATGCCATGGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTTGCCAC 461011 Query 23505 CCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGG 23564 ||||||| || || || || ||| | ||| || | | ||| || | |||||||||| Sbjct 461012 CCTGATCAACATATCGAGCGGTGGCATCGTAGACACGCAACATAGGAATTAGACCGTTGG 461071 Query 23565 ACGCGCCGCCTACGCCCGCCACACT-CGAACCTTTTGCTCGAACGTTGTGAACGTGGAAA 23623 | | |||| | || ||| | |||||| | || |||| | ||| |||| | | Sbjct 461072 ATGTGCCGT-TGGTACCACCAATGTACGAACCAGTCGCACGAATGCGGTGTACGTTCAGA 461130 Query 23624 CCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCC 23683 || ||||| ||| | | || || ||||| || || || || ||||||||||||||| Sbjct 461131 CCGATGCCACCGGCAGTCTTTGAAATCATAGCACAGGTCTTGAGCGTGTCGTAGATGCCC 461190 Query 23684 TCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTA 23743 || ||||||||||| || | ||| | ||| || || || | |||| ||||| Sbjct 461191 TCTATGCTGTCCTCCTTCATATCGATGAGGAAGCAGGAGGAGAGCTGCGGCGACGGCGTG 461250 Query 23744 GCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACAT-TAGATTGTA 23802 | || ||||| || || ||||| || ||||| ||||||||| ||| | ||| Sbjct 461251 CCAGCATTAAACAGAGTGGGAGACGCGTGTGTGAAGTACTTATTCGACATGTAG-TCGTA 461309 Query 23803 CGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCAT 23862 || || ||||| |||||||| || |||||||| || | || || ||||| ||||| Sbjct 461310 AGTCTCAATGGCACTCTCAATGTCTTCACCGTGTATGCCAACCGCAACACGCATAATCAT 461369 Query 23863 GTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGT 23922 || || |||||||| || ||| || ||| || || || || | | || || Sbjct 461370 GTGCTGTGGTCTCTCTGCCACCTTGCCATTGATTCGGAGAAGGTAGGACCTCTCCAATGT 461429 Query 23923 TTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCA 23978 ||| || |||||||| | ||||| |||||||| |||| || |||||||| |||| Sbjct 461430 TTTGAAGCCAAAATACTGGTAGTTGAAGTCACGGTCGTAAACGATGGCCGAGTTCA 461485 >seq15 Length=603150 Score = 158 bits (174), Expect = 1e-33 Identities = 327/480 (68%), Gaps = 20/480 (4%) Strand=Plus/Plus Query 57958 CCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCA 58017 |||| |||||| | || ||||| ||||| ||||| || || || ||||| || || Sbjct 375897 CCACCTTCGCCTCACGCCTCATCGCCTTCGCTGCCGTGGAGGGCATCTTCTTCTCTGGTG 375956 Query 58018 GCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCA 58077 |||||| | || || ||| | ||||| || || || ||||| ||| |||| || || Sbjct 375957 CCTTTGCTTCCATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCGGGCTTGACCTTCTCCA 376016 Query 58078 ACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTC 58137 ||||| | || || |||||||||||| | || || || || || ||||| | | | Sbjct 376017 ACGAGCTCATTTCACGCGACGAGGGTATGCACACCGACTTCGCCTGCCTGCTCTTCAGCA 376076 Query 58138 ACATTGTCAATAAACCGACGCGGGA-TCGCATCTTGGACATTATCACCGAGGCGGTCGCG 58196 ||| ||||| ||| | | || ||| | | | ||| ||||||||||| ||| | Sbjct 376077 TGATTCAAAATAAGCCGTCTCCAGAGTCGGTGCGT-GCCATCATCACCGAGGCTGTCTCC 376135 Query 58197 ATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGC-CATGCTCGGTATGAACAATGA 58255 ||||| || ||||| ||||||||||||| || || | | ||||||||||||| || Sbjct 376136 ATCGAGAAAGAGTTCCTCACCGAAGCCCTGCC-TTGCCGCCTGCTCGGTATGAATGCAGA 376194 Query 58256 TTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAG---ACTTTTG---CTCG--AACTG 58307 | |||| |||||||||||||||| || ||| | || || |||| ||| Sbjct 376195 CCTTATGTGCCAGTACATTGAGTTTGTAGCAGACCGCTTGCTCATGGCTCTCGGCAACAC 376254 Query 58308 ATTGGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTC 58367 | || | |||||| ||| || ||||| || || ||| | |||||||| Sbjct 376255 AAAGGTG--------TACAACGCGACGAACCCGTTCGACTTCATGGAGAACATCTCGCTG 376306 Query 58368 GAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATG 58427 | ||||||||||| || ||||| || ||| |||| || || || ||| || ||| Sbjct 376307 GCAGGCAAGACAAATTTCTTCGAGAAGCGCGTTGGCGACTACCAGAAGGCCGGTGTCATG 376366 >seq23 Length=461238 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| || ||||| || ||||||||| | || |||||| | || Sbjct 205093 ATGCAAATTTTCGTGAAGACGCTCACAGGAAAGACGATCACCCTAGAAGTTGAATCCTCA 205152 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || || || || |||||||| || | || || || || Sbjct 205153 GACACGATTGACAATGTGAAGACCAAG-ATTCAAGACAAGGAGGGTATTCCACCAGATCA 205211 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || |||||||| || || |||| || | || || || || || Sbjct 205212 GCAGCGCTTGATCTTCGCTGGTAAGCAACTGGAGGATGGTCGCACGCTGTCAGACTACAA 205271 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||||||| || |||||||| || |||| || | || | |||||| Sbjct 205272 CATTCAAAAGGAGTCGACTCTGCACTTGGTGCTCCGTCTCCGTGGCGGT 205320 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||||||||| || || || ||||| | || || || | || Sbjct 204865 ATGCAGATCTTCGTCAAGACTCTGACTGGAAAGACCATCACGCTTGAGGTCGAGTCATCT 204924 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | ||||| | ||| ||||||||| ||| | || || |||||| Sbjct 204925 GATACCATCGATAACGTCAAGACCAAAATTCAGGACAAGGAGGGCATCCCACCAGACCAG 204984 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || |||||||| |||||| | ||||| ||| || || || || Sbjct 204985 CAGCGCCTGATCTTCGCTGGTAAACAGCTCGAAGATGGCCGTACTCTGTCTGACTACAAT 205044 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||||| || || ||||| || || || || Sbjct 205045 ATTCAAAAGGAGTCTACTCTGCACCTTGTGCT 205076 Score = 91.5 bits (100), Expect = 1e-13 Identities = 122/167 (73%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 31215 TGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAA-A 31273 |||| ||||| || |||||| |||| || || ||||||||| |||| | || || | Sbjct 204485 TGACTGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCGACACCATCGACAATGTTAAGA 204544 Query 31274 CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGC 31333 | ||| | ||||||||| ||| | || || ||||||||||| || || |||||||| Sbjct 204545 CCAAGATTCA-GGACAAGGAGGGCATCCCACCAGACCAGCAGCGCCTGATCTTCGCTGGT 204603 Query 31334 AAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAA 31380 |||||| | |||||| ||| || ||| || |||||||| || Sbjct 204604 AAACAGCTCGAAGACGGCCGCACTCTGTCCGACTACAACATTCAGAA 204650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764355046640