Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq10 201 1e-46 >seq10 Length=848763 Score = 201 bits (222), Expect = 1e-46 Identities = 547/825 (66%), Gaps = 18/825 (2%) Strand=Plus/Plus Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATG 66118 ||||||||||| || |||||||| |||| | ||| ||| || | ||| | | | | Sbjct 460852 ACTCGTTTCATGAACAGATCAGGCGTCCACAAAGC-ATAGAAGAGATCACGAGCACGGTT 460910 Query 66119 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGG 66178 || || || || ||||| | || || | | | ||| ||| |||||| || Sbjct 460911 CTCTTCCTTACCGTGGTTCTTGCGCAAGTCAAGCCAGCCAAAAATGTCAGCATGCCATGG 460970 Query 66179 TTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 66238 || | ||| ||||| | | | || || || ||||| || |||||||| | |||| ||| Sbjct 460971 CTCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTTGCCACCCTGATCAACATATCGAGC 461030 Query 66239 GGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGA 66298 |||| || || || | |||||| ||||| | ||| |||||||| || ||||| || Sbjct 461031 GGTGGCATCGTAGACACGCAACATAGGAATTAGACCGTTGGATGTGCCGTTGGTACCACC 461090 Query 66299 GATATAGCTTCCACTTGCACGAATAT----TACTAATTGATAGACCTATTCCCCCTGCCA 66354 || || ||| | |||||||| ||| || | |||| || || || || Sbjct 461091 AATGTACGAACCAGTCGCACGAATGCGGTGTACG--TTCA--GACCGATGCCACCGGCAG 461146 Query 66355 TTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCA 66414 | || || || | || || || | ||| || |||||||||||||| || || ||| Sbjct 461147 TCTTTGAAATCATAGCACAGGTCTTGAGCGTGTCGTAGATGCCCTCTATGCTGTCCTCCT 461206 Query 66415 TCATGTTAAGTAGAAAACAGCTAGACATTTG--GTGACGACTAGTTCCCGCATTAAATAA 66472 |||| | | || || ||| || | || | |||| | || || |||||||| | Sbjct 461207 TCATATCGATGAGGAAGCAGGAGGAGAGCTGCGGCGACGGC--GTGCCAGCATTAAACAG 461264 Query 66473 GGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAA-GTAGATTGTACGTCTCAATAGCTG 66531 || ||||| ||||| || || | || | || | |||| | ||| |||||||| || Sbjct 461265 AGTGGGAGACGCGTGTGTGAAGTACTTATTCGACATGTAG-TCGTAAGTCTCAATGGCAC 461323 Query 66532 AGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTT 66590 || || || || | || || || || || |||||||| | ||||||||| ||||| Sbjct 461324 TCTCAATGTCTTCACCG-TGTATGCCAACCGCAACACGCATAATCATGTGCTGTGGTCTC 461382 Query 66591 TCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAA 66650 || | | |||| || ||| | | |||||| | ||||| ||||| || |||||| Sbjct 461383 TCTGCCACCTTGCCATTGATTCGGAGAAGGTAGGACCTCTCCAATGTTTTGAAGCCAAAA 461442 Query 66651 TAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTG 66710 || | ||| ||||| || ||||||| || ||||||| || | ||| | || Sbjct 461443 TACTGGTAGTTGAAGTCACGGTCGTAAACGATGGCCGAGTTCAGCTCGTCCGCGTGCTTC 461502 Query 66711 TTAACTACATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTG 66770 | | | ||| ||| | | || || || || | || || || ||||| || ||| Sbjct 461503 ATGATGATATCATACGTAGTCTTCGAGATCATAGGGCAGTGCTTGCCGTTTTTTGGGTTG 461562 Query 66771 ACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGA 66830 ||||||||| | | ||| || || ||| | |||| | ||||| |||| ||||| || Sbjct 461563 ACATAGTTGTAGAGATCATCGATGACTGCCGAAAATTGCTTTTTAGTTTGCTTGTGAAGG 461622 Query 66831 TTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCCGGATGT 66875 || ||||||||||| | || || | | || || || |||||| Sbjct 461623 TTCGATACGGCTATACGTGCAGCGAGCACAGCGTAGTCTGGATGT 461667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658169780632280