Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq8 91.5 1e-13 >seq8 Length=997024 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/211 (71%), Gaps = 8/211 (4%) Strand=Plus/Minus Query 21131 GTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGAT 21190 ||| ||||| || | ||||| | ||||| |||||||||||||||| || | ||| Sbjct 376826 GTGGCAAGGTGGCAAGGCCATTTTCTTCAGGTCGGCGGGGTTCCACGCGCTCAGGATGAT 376767 Query 21191 GCGCCGATCGTGGGGCCGCCTGTTAATTAG---ATCCACCACGTAACGC-AGCTGGTCCA 21246 ||||||||||| | || |||| | || ||| | ||||| ||| |||||||||| Sbjct 376766 GCGCCGATCGT---ACGGCTTGTTCTTGAGCTTATCGATCACGT-CCGCGAGCTGGTCCA 376711 Query 21247 CCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCACT 21306 | ||||| ||| || | | | || | ||||||||| || || || | ||||| Sbjct 376710 CACCCTGCCCCGTATAATCCGTATGCGCGTCGACGTACTCCGCTCCGAAGTGACGCCACT 376651 Query 21307 GGAACCCGTACACCGGCCCCAGATCGCCCTC 21337 |||| || || || || || || |||||||| Sbjct 376650 GGAAACCATATACGGGACCGAGGTCGCCCTC 376620 Score = 89.7 bits (98), Expect = 4e-13 Identities = 118/160 (74%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 20946 TAAACGTGGGCGTCACCCAAGGTGTGCA-CAAAGTCTCCCGGGGTCAGGCCCGTGACGTG 21004 || ||||| ||||| |||| ||||||| ||| || || || ||||| | |||||| Sbjct 377068 TACACGTGTGCGTCGCCCATGGTGTGCGTCAACGTG-CCGGGAATCAGGTCGCAGACGTG 377010 Query 21005 AGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCAT 21064 |||| || | |||||| | ||||| ||||||||| ||||| || || |||||||| Sbjct 377009 GGCGAGCATGTGCGTCAGCAACGCGTACGAGGCGATGTTGAACGGCACGCCTAGGCCCAT 376950 Query 21065 GTCGGCGGACCTCTGGTACAGCTGGCAGGACAGC-TCCCC 21103 |||| |||| ||| ||||| |||| |||| ||||| Sbjct 376949 GTCGCACGACCGCTGATACAGGATGCAGTGCAGCGTCCCC 376910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427774086638160