Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq23 96.9 3e-15 >seq23 Length=461238 Score = 96.9 bits (106), Expect = 3e-15 Identities = 123/167 (74%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 139577 TTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATC 139636 || |||||||| || ||| || |||| ||||||||||||||||||||| ||||| Sbjct 204650 TTCTGAATGTTGTAGTCGGACAGAGTGCGGCCGTCTTCGAGCTGTTTACCAGCGAAGATC 204591 Query 139637 AGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTC 139695 || || ||||| || || || ||||| || ||||| ||| | || || ||| | | || Sbjct 204590 AGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTC-CTGAATCTTGGTCTTAACATTGTC 204532 Query 139696 CACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCA 139742 | ||||||| | ||| ||||| | ||| | |||||||| |||| Sbjct 204531 GATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGTCA 204485 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| |||||||| || || || || || | |||||||||||||||||| Sbjct 205061 GTAGACTCCTTTTGAATATTGTAGTCAGACAGAGTACGGCCATCTTCGAGCTGTTTACCA 205002 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGT-TT 139686 || ||||||| || ||||| || || || ||||| || ||||| ||| |||| || || Sbjct 205001 GCGAAGATCAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTC-CTGAATTTTGGTCTT 204943 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | || || | | ||| ||||||| || | ||||| || |||| || Sbjct 204942 GACGTTATCGATGGTATCAGATGACTCGACCTCAAGCGTGATGGTCTTTCCAGTCAGAGT 204883 Query 139747 TTTTACGAATATTTGCATA 139765 || ||||| || |||||| Sbjct 204882 CTTGACGAAGATCTGCATA 204864 Score = 93.3 bits (102), Expect = 4e-14 Identities = 163/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || ||||| || | ||| | || ||||| | || ||||| ||||||||||| || || Sbjct 205322 TGACCGCCACGGAGACGGAGCACCAAGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCT 205263 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 || |||| || || || || |||||||| |||||| || |||||||| || Sbjct 205262 GACAGCGTGCGACCATCCTCCAGTTGCTTACCAGCGAAGATCAAGCGCTGCTGATCTGGT 205203 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713 || || || || ||||| ||| | || || || | | || | ||||| | || || Sbjct 205202 GGAATACCCTCCTTGTC-TTGAATCTTGGTCTTCACATTGTCAATCGTGTCTGAGGATTC 205144 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || || | ||| | |||||| || || | ||| || ||||| ||||||||| || Sbjct 205143 AACTTCTAGGGTGATCGTCTTTCCTGTGAGCGTCTTCACGAAAATTTGCATACCT 205089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496061724306400