Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23]
367 sequences; 31,780,469 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq23 96.9 3e-15
>seq23
Length=461238
Score = 96.9 bits (106), Expect = 3e-15
Identities = 123/167 (74%), Gaps = 2/167 (1%)
Strand=Plus/Minus
Query 139577 TTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATC 139636
|| |||||||| || ||| || |||| ||||||||||||||||||||| |||||
Sbjct 204650 TTCTGAATGTTGTAGTCGGACAGAGTGCGGCCGTCTTCGAGCTGTTTACCAGCGAAGATC 204591
Query 139637 AGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTC 139695
|| || ||||| || || || ||||| || ||||| ||| | || || ||| | | ||
Sbjct 204590 AGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTC-CTGAATCTTGGTCTTAACATTGTC 204532
Query 139696 CACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCA 139742
| ||||||| | ||| ||||| | ||| | |||||||| ||||
Sbjct 204531 GATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGTCA 204485
Score = 95.1 bits (104), Expect = 1e-14
Identities = 142/199 (71%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|||||||| |||||||| || || || || || | ||||||||||||||||||
Sbjct 205061 GTAGACTCCTTTTGAATATTGTAGTCAGACAGAGTACGGCCATCTTCGAGCTGTTTACCA 205002
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGT-TT 139686
|| ||||||| || ||||| || || || ||||| || ||||| ||| |||| || ||
Sbjct 205001 GCGAAGATCAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTC-CTGAATTTTGGTCTT 204943
Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746
| | || | || || | | ||| ||||||| || | ||||| || |||| ||
Sbjct 204942 GACGTTATCGATGGTATCAGATGACTCGACCTCAAGCGTGATGGTCTTTCCAGTCAGAGT 204883
Query 139747 TTTTACGAATATTTGCATA 139765
|| ||||| || ||||||
Sbjct 204882 CTTGACGAAGATCTGCATA 204864
Score = 93.3 bits (102), Expect = 4e-14
Identities = 163/235 (69%), Gaps = 2/235 (1%)
Strand=Plus/Minus
Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594
|| ||||| || | ||| | || ||||| | || ||||| ||||||||||| || ||
Sbjct 205322 TGACCGCCACGGAGACGGAGCACCAAGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCT 205263
Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654
|| |||| || || || || |||||||| |||||| || |||||||| ||
Sbjct 205262 GACAGCGTGCGACCATCCTCCAGTTGCTTACCAGCGAAGATCAAGCGCTGCTGATCTGGT 205203
Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713
|| || || || ||||| ||| | || || || | | || | ||||| | || ||
Sbjct 205202 GGAATACCCTCCTTGTC-TTGAATCTTGGTCTTCACATTGTCAATCGTGTCTGAGGATTC 205144
Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768
|| || | ||| | |||||| || || | ||| || ||||| ||||||||| ||
Sbjct 205143 AACTTCTAGGGTGATCGTCTTTCCTGTGAGCGTCTTCACGAAAATTTGCATACCT 205089
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496061724306400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |