Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq10 224 1e-53 >seq10 Length=848763 Score = 224 bits (248), Expect = 1e-53 Identities = 599/903 (66%), Gaps = 18/903 (2%) Strand=Plus/Plus Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920 || ||||| || || | |||||| | | ||||| ||| | ||||| | | | | Sbjct 460774 TCAAACTCTTCGCCGTAGACATCGGCGAGGCCAGGTGCTTCATTGGGACAGAAGAGTGTC 460833 Query 79921 CACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 79979 ||| |||| | | ||||||||||| || |||||||| |||| | ||| ||| || Sbjct 460834 CACATACCATTCTGTTCAACTCGTTTCATGAACAGATCAGGCGTCCACAAAGC-ATAGAA 460892 Query 79980 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 80039 ||||| | | | | ||| || || || ||||| | || || | | | Sbjct 460893 GAGATCACGAGCACGGTTCTCTTCCTTACCGTGGTTCTTGCGCAAGTCAAGCCAGCCAAA 460952 Query 80040 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCC 80099 ||| |||| |||||| || || | ||| ||||| | | | || || || ||||| || || Sbjct 460953 AATGTCAGCATGCCATGGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTTGCCACC 461012 Query 80100 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 80159 |||||| | |||| ||||||| || || || | |||||| ||||| | ||| ||||| Sbjct 461013 CTGATCAACATATCGAGCGGTGGCATCGTAGACACGCAACATAGGAATTAGACCGTTGGA 461072 Query 80160 TGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT----TACTAATTGATA 80215 ||| || ||||| || || || ||| | |||||||| ||| || | Sbjct 461073 TGTGCCGTTGGTACCACCAATGTACGAACCAGTCGCACGAATGCGGTGTACG--TTCA-- 461128 Query 80216 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 80275 |||| || || || || | || || || | || || || | ||| || ||||||| Sbjct 461129 GACCGATGCCACCGGCAGTCTTTGAAATCATAGCACAGGTCTTGAGCGTGTCGTAGATGC 461188 Query 80276 CCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAG--CTAGACATTTGGTGACGACT 80333 |||||||||| || || |||| | | || || ||| ||| | || |||| | Sbjct 461189 CCTCTATGCTGTCCTCCTTCATATCGATGAGGAAGCAGGAGGAGAGCTGCGGCGACGGC- 461247 Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA-GTAGAT 80392 || || |||||||| | || ||||| ||||| || || | || | |||| |||| | Sbjct 461248 -GTGCCAGCATTAAACAGAGTGGGAGACGCGTGTGTGAAGTACTTATTCGACATGTAG-T 461305 Query 80393 TGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGAATTCCTACCGCGACACGCATT 80451 ||| |||||||| || || || || || | || || || ||||| |||||||| Sbjct 461306 CGTAAGTCTCAATGGCACTCTCAATGTCTTCACCG-TGTATGCCAACCGCAACACGCATA 461364 Query 80452 AACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCC 80511 | ||||||||| ||||| || | | |||| ||| ||| | | ||| || | ||| Sbjct 461365 ATCATGTGCTGTGGTCTCTCTGCCACCTTGCCATTGATTCGGAGAAGGTAGGACCTCTCC 461424 Query 80512 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTG 80571 || ||||| || |||||||| | ||| ||||| || ||||||| || ||||||| Sbjct 461425 AATGTTTTGAAGCCAAAATACTGGTAGTTGAAGTCACGGTCGTAAACGATGGCCGAGTTC 461484 Query 80572 AGTTTATCCTTATATTTGTTAACTACATCCATGGTGATACTTGAAATAATCGGAGAATGT 80631 || | ||| | || | | | ||| || | | || || || || | || Sbjct 461485 AGCTCGTCCGCGTGCTTCATGATGATATCATACGTAGTCTTCGAGATCATAGGGCAGTGC 461544 Query 80632 TTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttt 80691 || || ||||| || || ||||||||| | | ||| || || ||| | |||| | ||| Sbjct 461545 TTGCCGTTTTTTGGGTTGACATAGTTGTAGAGATCATCGATGACTGCCGAAAATTGCTTT 461604 Query 80692 tttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGA 80751 || |||| |||||| || || ||||||||||| | || || | | || || |||||| Sbjct 461605 TTAGTTTGCTTGTGAAGGTTCGATACGGCTATACGTGCAGCGAGCACAGCGTAGTCTGGA 461664 Query 80752 TGT 80754 ||| Sbjct 461665 TGT 461667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718265504941880