Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23]
367 sequences; 31,780,469 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq10 237 2e-57
>seq10
Length=848763
Score = 237 bits (262), Expect = 2e-57
Identities = 580/869 (67%), Gaps = 10/869 (1%)
Strand=Plus/Plus
Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033
||||| |||||| ||||| | | || |||| |||| | | |||||||||||
Sbjct 460804 CCAGGTGCTTCATTGGGACAGAAGAGTGTCCACATACCATTCTGTTCAACTCGTTTCATG 460863
Query 72034 AAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCC 72092
|| |||||||| |||| | ||| ||| || ||||| | | | | ||| || || ||
Sbjct 460864 AACAGATCAGGCGTCCACAAAGC-ATAGAAGAGATCACGAGCACGGTTCTCTTCCTTACC 460922
Query 72093 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 72152
||||| | || || | | | ||| |||| |||||| || || | ||| ||
Sbjct 460923 GTGGTTCTTGCGCAAGTCAAGCCAGCCAAAAATGTCAGCATGCCATGGCTCAAGGTAAAT 460982
Query 72153 GGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 72212
||| | | | || || || ||||| || |||||||| | |||| ||||||| || ||
Sbjct 460983 GGCGAAAGCACCGGGGCGCTTGTTGCCACCCTGATCAACATATCGAGCGGTGGCATCGTA 461042
Query 72213 AACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCC 72272
|| | |||||| ||||| | ||| ||||||| || ||||| || || || ||
Sbjct 461043 GACACGCAACATAGGAATTAGACCGTTGGATGTGCCGTTGGTACCACCAATGTACGAACC 461102
Query 72273 ACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 72332
| | |||||||| | | ||||| || || || || | || || || | ||
Sbjct 461103 AGTCGCACGAATGCGGTGTACGTTCAGACCGATGCCACCGGCAGTCTTTGAAATCATAGC 461162
Query 72333 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 72392
|| || | ||| || |||||||||||||| || || ||| |||| | | || ||
Sbjct 461163 ACAGGTCTTGAGCGTGTCGTAGATGCCCTCTATGCTGTCCTCCTTCATATCGATGAGGAA 461222
Query 72393 ACAGCTAGACATTTG--GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 72450
||| || | || | |||| | || || |||||||| | || ||||| |||||
Sbjct 461223 GCAGGAGGAGAGCTGCGGCGACGGC--GTGCCAGCATTAAACAGAGTGGGAGACGCGTGT 461280
Query 72451 GTAAACCATTTTTCAGACA-GTAGATTGTACGTCTCAATAGCTGATTCTATATCC-CATT 72508
|| || | || | |||| |||| | ||| |||||||| || || || || ||
Sbjct 461281 GTGAAGTACTTATTCGACATGTAG-TCGTAAGTCTCAATGGCACTCTCAATGTCTTCACC 461339
Query 72509 GATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTAT 72568
| ||||| || ||||| |||||||| | ||| ||||| ||||| || | | |||| ||
Sbjct 461340 G-TGTATGCCAACCGCAACACGCATAATCATGTGCTGTGGTCTCTCTGCCACCTTGCCAT 461398
Query 72569 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 72628
| ||| | | |||||| | ||||| ||||| || |||||||| | ||| ||||
Sbjct 461399 TGATTCGGAGAAGGTAGGACCTCTCCAATGTTTTGAAGCCAAAATACTGGTAGTTGAAGT 461458
Query 72629 CTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGG 72688
| || ||||||| || |||| || || | ||| | || | | ||||| |
Sbjct 461459 CACGGTCGTAAACGATGGCCGAGTTCAGCTCGTCCGCGTGCTTCATGATGATATCATACG 461518
Query 72689 TGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAAT 72748
| | | || || || || | || || || ||||| || || ||||||||| | | ||
Sbjct 461519 TAGTCTTCGAGATCATAGGGCAGTGCTTGCCGTTTTTTGGGTTGACATAGTTGTAGAGAT 461578
Query 72749 CCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTC 72808
| || || ||| | |||| | ||||| |||| |||||| || || ||||||||||| |
Sbjct 461579 CATCGATGACTGCCGAAAATTGCTTTTTAGTTTGCTTGTGAAGGTTCGATACGGCTATAC 461638
Query 72809 TGGCGGCTAGAATGGCATAATCTGGATGT 72837
|| || || | || || |||||||||
Sbjct 461639 GTGCAGCGAGCACAGCGTAGTCTGGATGT 461667
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671136121148920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |