Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq10 237 2e-57 >seq10 Length=848763 Score = 237 bits (262), Expect = 2e-57 Identities = 580/869 (67%), Gaps = 10/869 (1%) Strand=Plus/Plus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 ||||| |||||| ||||| | | || |||| |||| | | ||||||||||| Sbjct 460804 CCAGGTGCTTCATTGGGACAGAAGAGTGTCCACATACCATTCTGTTCAACTCGTTTCATG 460863 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCC 72092 || |||||||| |||| | ||| ||| || ||||| | | | | ||| || || || Sbjct 460864 AACAGATCAGGCGTCCACAAAGC-ATAGAAGAGATCACGAGCACGGTTCTCTTCCTTACC 460922 Query 72093 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 72152 ||||| | || || | | | ||| |||| |||||| || || | ||| || Sbjct 460923 GTGGTTCTTGCGCAAGTCAAGCCAGCCAAAAATGTCAGCATGCCATGGCTCAAGGTAAAT 460982 Query 72153 GGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 72212 ||| | | | || || || ||||| || |||||||| | |||| ||||||| || || Sbjct 460983 GGCGAAAGCACCGGGGCGCTTGTTGCCACCCTGATCAACATATCGAGCGGTGGCATCGTA 461042 Query 72213 AACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCC 72272 || | |||||| ||||| | ||| ||||||| || ||||| || || || || Sbjct 461043 GACACGCAACATAGGAATTAGACCGTTGGATGTGCCGTTGGTACCACCAATGTACGAACC 461102 Query 72273 ACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 72332 | | |||||||| | | ||||| || || || || | || || || | || Sbjct 461103 AGTCGCACGAATGCGGTGTACGTTCAGACCGATGCCACCGGCAGTCTTTGAAATCATAGC 461162 Query 72333 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 72392 || || | ||| || |||||||||||||| || || ||| |||| | | || || Sbjct 461163 ACAGGTCTTGAGCGTGTCGTAGATGCCCTCTATGCTGTCCTCCTTCATATCGATGAGGAA 461222 Query 72393 ACAGCTAGACATTTG--GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 72450 ||| || | || | |||| | || || |||||||| | || ||||| ||||| Sbjct 461223 GCAGGAGGAGAGCTGCGGCGACGGC--GTGCCAGCATTAAACAGAGTGGGAGACGCGTGT 461280 Query 72451 GTAAACCATTTTTCAGACA-GTAGATTGTACGTCTCAATAGCTGATTCTATATCC-CATT 72508 || || | || | |||| |||| | ||| |||||||| || || || || || Sbjct 461281 GTGAAGTACTTATTCGACATGTAG-TCGTAAGTCTCAATGGCACTCTCAATGTCTTCACC 461339 Query 72509 GATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTAT 72568 | ||||| || ||||| |||||||| | ||| ||||| ||||| || | | |||| || Sbjct 461340 G-TGTATGCCAACCGCAACACGCATAATCATGTGCTGTGGTCTCTCTGCCACCTTGCCAT 461398 Query 72569 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 72628 | ||| | | |||||| | ||||| ||||| || |||||||| | ||| |||| Sbjct 461399 TGATTCGGAGAAGGTAGGACCTCTCCAATGTTTTGAAGCCAAAATACTGGTAGTTGAAGT 461458 Query 72629 CTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGG 72688 | || ||||||| || |||| || || | ||| | || | | ||||| | Sbjct 461459 CACGGTCGTAAACGATGGCCGAGTTCAGCTCGTCCGCGTGCTTCATGATGATATCATACG 461518 Query 72689 TGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAAT 72748 | | | || || || || | || || || ||||| || || ||||||||| | | || Sbjct 461519 TAGTCTTCGAGATCATAGGGCAGTGCTTGCCGTTTTTTGGGTTGACATAGTTGTAGAGAT 461578 Query 72749 CCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTC 72808 | || || ||| | |||| | ||||| |||| |||||| || || ||||||||||| | Sbjct 461579 CATCGATGACTGCCGAAAATTGCTTTTTAGTTTGCTTGTGAAGGTTCGATACGGCTATAC 461638 Query 72809 TGGCGGCTAGAATGGCATAATCTGGATGT 72837 || || || | || || ||||||||| Sbjct 461639 GTGCAGCGAGCACAGCGTAGTCTGGATGT 461667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671136121148920