Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23]
367 sequences; 31,780,469 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq15 93.3 4e-14
>seq15
Length=603150
Score = 93.3 bits (102), Expect = 4e-14
Identities = 275/415 (66%), Gaps = 17/415 (4%)
Strand=Plus/Plus
Query 50449 tttttttCCGGTAGCTTTGCAGCCATATTTTACATTAAAACCTTAGGCATAATGCCCGGC 50508
|| || || ||| |||||| |||| || | |||| | ||| | ||||| |||
Sbjct 375944 TTCTTCTCTGGTGCCTTTGCTTCCATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCGGGC 376003
Query 50509 CTCACGTTTAGCAACGAGTTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCGTGT 50568
| || || ||||||| | ||||| |||||||| || |||||||| ||||| || ||
Sbjct 376004 TTGACCTTCTCCAACGAGCTCATTTCACGCGACGAGGGTATGCACACCGACTTCGCCTGC 376063
Query 50569 TTGTACTACAATACGCGCGTAAATGAAAAATTATCATACGAAACAATTT-TG---GACAT 50624
|| || || | | || ||||| | | | | | | || | |||
Sbjct 376064 CTGCTCTTCAGCATG-------ATTCAAAATAAGCCGTCTCCAGAGTCGGTGCGTGCCAT 376116
Query 50625 GTTCAAAGAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCAT- 50683
||| || || ||| |||||| |||||||| |||| || || | || || |
Sbjct 376117 CATCACCGAGGCTGTCTCCATCGAGAAAGAGTTCCTCACCGAAGCCCTGCCT-TGCCGCC 376175
Query 50684 TGTTGGGCATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTGT 50743
|| | || ||||| |||||| | |||||| |||||||||||||||| |||||| | |||
Sbjct 376176 TGCTCGGTATGAATGCAGACCTTATGTGCCAGTACATTGAGTTTGTAGCAGACCGCTTGC 376235
Query 50744 TGTTGCAGCTGGGACAAC-CGAAATACTATAATGC-ACGTAACCCCTTTCCGTTTATGAA 50801
| || || || |||| | || || || || ||| ||||| || || ||| |
Sbjct 376236 TCATGGCTCTCGG-CAACACAAAGGTGTACAACGCGACG-AACCCGTTCGACTTCATGGA 376293
Query 50802 TAACATATCGTTGGAGGGCAAAACAAACTTTTTCGAAAGACGTGTAGGCGAATAC 50856
||||| ||| ||| ||||| ||||| || ||||| | || || ||||| |||
Sbjct 376294 GAACATCTCGCTGGCAGGCAAGACAAATTTCTTCGAGAAGCGCGTTGGCGACTAC 376348
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 507012074071440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |