Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq10 143 4e-29 seq15 125 1e-23 seq8 98.7 1e-15 >seq10 Length=848763 Score = 143 bits (158), Expect = 4e-29 Identities = 353/530 (67%), Gaps = 4/530 (1%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || ||||||| ||| || ||| | || ||| | | | ||| |||| | | ||| Sbjct 461084 ACCAACGGCACATCCAACGGTCTAATTCCTATGTTGCGTGTCTACGATGCCACCGCTCGA 461025 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 || ||| ||||| ||||| || || || || ||| | ||| | ||| | || || ||| Sbjct 461024 TATGTTGATCAGGGTGGCAACAAGCGCCCCGGTGCTTTCGCCATTTACCTTGAGCCATGG 460965 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 || || ||| |||||| || | || ||||||| ||| || |||||| || Sbjct 460964 CATGCTGACATTTTTGGCTGGCTTGACTTGCGCAAGAACCACGGTAAGGAAGAGAACCGT 460905 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGAC 97046 || | || | || ||||| | ||| ||| ||| |||||||||| || || | | Sbjct 460904 GCTCGTGATCTCTTCTATGCTTTGTGGACGCCTGATCTGTTCATGAAACGAGTTGAACAG 460845 Query 97047 GGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGC 97106 ||| |||| || | || ||| | |||| || || ||||| || ||| Sbjct 460844 AATGGTATGTGGACACTCTTCTGTCCCAATGAAGCACCTGGCCTCGCCGATGTCTACGGC 460785 Query 97107 GAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATA-CGTGAGACGAGT 97165 ||||||||||||||| ||| | |||||| | |||||||| |||||||| | Sbjct 460784 GAAGAGTTTGAGGCCCTATACGAGAAATACGAGAAGGAGGGCCGTGGTCGTGAGACCATC 460725 Query 97166 CGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGT 97224 || ||| | |||| |||||| | ||||| | ||| ||| |||||||| | ||| | Sbjct 460724 CG-TGCTC-AGAAGCTGTGGTATGCCATTCTTCAGGCACAGACCGAGACTGGCAATCCCT 460667 Query 97225 ACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCA 97284 ||| ||||||||||| | || ||||| |||||||| || |||| |||||| Sbjct 460666 TCATGCTCTACAAGGACGCTTGCAACCGCAAGAGCAACCAGAAAAACCTGGGAACCATCC 460607 Query 97285 AGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 ||||||| || ||||| || || | |||||| | | || |||||| Sbjct 460606 GCAGCTCCAACCTTTGCACCGAGATCATTGAGTACACTGCCCCAGACGAG 460557 >seq15 Length=603150 Score = 125 bits (138), Expect = 1e-23 Identities = 332/501 (66%), Gaps = 21/501 (4%) Strand=Plus/Plus Query 125361 ATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCC 125420 || || || |||||| | |||| | | || |||||| |||| ||| || | | |||| Sbjct 375848 ATTCGCAAGAAGGCTGACTGGGCGCTCCGCTGGATCTCTGACAGCAACTCCACCTTCGCC 375907 Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480 | || | || ||||| ||||| |||||||||||||| || ||| ||||| || Sbjct 375908 TCACGCCTCATCGCCTTCGCTGCCGTGGAGGGCATCTTCTTCTCTGGTGCCTTTGCTTCC 375967 Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATA 125540 ||||| ||||| |||||||| || |||||||| || |||| | |||||| | || Sbjct 375968 ATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCGGGCTTGACCTTCTCCAACGAGCTCATT 376027 Query 125541 TCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGT 125600 || || |||||||| | ||| ||||| ||| || || || ||| || | Sbjct 376028 TCACGCGACGAGGGTATGCACACCGACTTCGCCTGCCTGCTCTTCAGCATGATTCAAAAT 376087 Query 125601 --CCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGA 125658 ||| | |||| | | | | ||||| | ||||| || || | Sbjct 376088 AAGCCGTCTCCAGAGTCGGTG-----CGTGCCATCA------TCACCGAGGCTGTCTCCA 376136 Query 125659 TAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCA-AG 125717 | || ||||||| || |||||| |||| || | || || | || ||||| |||| | Sbjct 376137 TCGAGAAAGAGTTCCTCACCGAAGCCCTGCCTTGCCGCCTGCTCGGTATGAA-TGCAGAC 376195 Query 125718 CTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGC 125777 || |||||| ||||||| |||||||| ||||| || || || | | | ||| | Sbjct 376196 CTTATGTGCCAGTACATTGAGTTTGTAGCAGACCG-CT--TGCTCATGGCTCTCGGCAAC 376252 Query 125778 ---AAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGT 125834 ||| | |||||||| | ||| || || || |||||| | ||| || || | || Sbjct 376253 ACAAAGGTGTACAACGCGACGAACCCGTTCGACTTCATGGAGAACATCTCGCTGGCAGGC 376312 Query 125835 AAGACCAACTTTTTCGAGAAG 125855 ||||| || || ||||||||| Sbjct 376313 AAGACAAATTTCTTCGAGAAG 376333 Score = 114 bits (126), Expect = 2e-20 Identities = 202/289 (70%), Gaps = 4/289 (1%) Strand=Plus/Plus Query 125028 ATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGAC 125087 |||||||| ||||| ||| ||||| ||||| | || ||| ||||||||||||||||| Sbjct 375455 ATGTACAAGAAGGCAATGGCATCCTTCTGGACTGCAGAGGAGATCGATCTGTCCAAGGAC 375514 Query 125088 CTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTG 125147 | || ||| | | ||| | | || ||||| || || |||||||| | Sbjct 375515 ATTCCTGACTGGAACAACCGTCTTAACGATGACGAGCGCTTCTTCATCTCGCACATCCTC 375574 Query 125148 GCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACGATTC-TCTC 125205 |||||||| |||| || ||||| ||||| ||||| || || || || ||| ||| | | Sbjct 375575 GCCTTCTTCGCCGCGTCGGATGGCATCGTGAACGAGAACCTAGTCGA-ACGCTTCAGCGC 375633 Query 125206 AAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACG 125265 | ||| | |||||||||| ||||| ||||| ||||| || || |||||| Sbjct 375634 AGAAGTACA-GATTCCAGAGGCACGCTGCTTCTACGGCTTCCAGATTGCCATGGAGAACA 375692 Query 125266 TGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC 125314 | ||||| || | |||||| || || |||| |||||| |||| || Sbjct 375693 TTCACTCCGAGACGTACTCGCTGCTTATCGACACGTACATCAGCGAGCC 375741 >seq8 Length=997024 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/209 (72%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 70317 TGTATCAGAGGA-GTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCT 70375 |||||||| || |||| ||||||||||| || || || || ||||| || || | Sbjct 376930 TGTATCAGCGGTCGTGC-GACATGGGCCTAGGCGTGCCGTTCAACATCGCCTCGTACGCG 376988 Query 70376 ATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGC--GCACGAGTTCGTACACA 70433 || ||||||||||| | || ||| | || ||||| | |||| ||| |||| Sbjct 376989 TTGCTGACGCACATGCTCGCCCACGTCTGCGACCTGATTCCCGGCAC--GTTGACGCACA 377046 Query 70434 CCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGTGCAACTCGAAC 70493 |||| |||||||| ||||||||| | ||||| ||||| | | || ||||| ||||| | Sbjct 377047 CCATGGGCGACGCACACGTGTATCTGGATCACGTCGAGGCGCTCAACGTGCAGCTCGAGC 377106 Query 70494 GGGAGCCGAGACCTTTTCCCAAGCTGGAG 70522 | || |||||| |||||| | ||||| Sbjct 377107 GCGAACCGAGAGACTTTCCCGACTTGGAG 377135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741055800390920