Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23]
367 sequences; 31,780,469 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq10 143 4e-29
seq15 125 1e-23
seq8 98.7 1e-15
>seq10
Length=848763
Score = 143 bits (158), Expect = 4e-29
Identities = 353/530 (67%), Gaps = 4/530 (1%)
Strand=Plus/Minus
Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866
|| ||||||| ||| || ||| | || ||| | | | ||| |||| | | |||
Sbjct 461084 ACCAACGGCACATCCAACGGTCTAATTCCTATGTTGCGTGTCTACGATGCCACCGCTCGA 461025
Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926
|| ||| ||||| ||||| || || || || ||| | ||| | ||| | || || |||
Sbjct 461024 TATGTTGATCAGGGTGGCAACAAGCGCCCCGGTGCTTTCGCCATTTACCTTGAGCCATGG 460965
Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986
|| || ||| |||||| || | || ||||||| ||| || |||||| ||
Sbjct 460964 CATGCTGACATTTTTGGCTGGCTTGACTTGCGCAAGAACCACGGTAAGGAAGAGAACCGT 460905
Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGAC 97046
|| | || | || ||||| | ||| ||| ||| |||||||||| || || | |
Sbjct 460904 GCTCGTGATCTCTTCTATGCTTTGTGGACGCCTGATCTGTTCATGAAACGAGTTGAACAG 460845
Query 97047 GGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGC 97106
||| |||| || | || ||| | |||| || || ||||| || |||
Sbjct 460844 AATGGTATGTGGACACTCTTCTGTCCCAATGAAGCACCTGGCCTCGCCGATGTCTACGGC 460785
Query 97107 GAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATA-CGTGAGACGAGT 97165
||||||||||||||| ||| | |||||| | |||||||| |||||||| |
Sbjct 460784 GAAGAGTTTGAGGCCCTATACGAGAAATACGAGAAGGAGGGCCGTGGTCGTGAGACCATC 460725
Query 97166 CGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGT 97224
|| ||| | |||| |||||| | ||||| | ||| ||| |||||||| | ||| |
Sbjct 460724 CG-TGCTC-AGAAGCTGTGGTATGCCATTCTTCAGGCACAGACCGAGACTGGCAATCCCT 460667
Query 97225 ACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCA 97284
||| ||||||||||| | || ||||| |||||||| || |||| ||||||
Sbjct 460666 TCATGCTCTACAAGGACGCTTGCAACCGCAAGAGCAACCAGAAAAACCTGGGAACCATCC 460607
Query 97285 AGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334
||||||| || ||||| || || | |||||| | | || ||||||
Sbjct 460606 GCAGCTCCAACCTTTGCACCGAGATCATTGAGTACACTGCCCCAGACGAG 460557
>seq15
Length=603150
Score = 125 bits (138), Expect = 1e-23
Identities = 332/501 (66%), Gaps = 21/501 (4%)
Strand=Plus/Plus
Query 125361 ATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCC 125420
|| || || |||||| | |||| | | || |||||| |||| ||| || | | ||||
Sbjct 375848 ATTCGCAAGAAGGCTGACTGGGCGCTCCGCTGGATCTCTGACAGCAACTCCACCTTCGCC 375907
Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480
| || | || ||||| ||||| |||||||||||||| || ||| ||||| ||
Sbjct 375908 TCACGCCTCATCGCCTTCGCTGCCGTGGAGGGCATCTTCTTCTCTGGTGCCTTTGCTTCC 375967
Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATA 125540
||||| ||||| |||||||| || |||||||| || |||| | |||||| | ||
Sbjct 375968 ATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCGGGCTTGACCTTCTCCAACGAGCTCATT 376027
Query 125541 TCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGT 125600
|| || |||||||| | ||| ||||| ||| || || || ||| || |
Sbjct 376028 TCACGCGACGAGGGTATGCACACCGACTTCGCCTGCCTGCTCTTCAGCATGATTCAAAAT 376087
Query 125601 --CCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGA 125658
||| | |||| | | | | ||||| | ||||| || || |
Sbjct 376088 AAGCCGTCTCCAGAGTCGGTG-----CGTGCCATCA------TCACCGAGGCTGTCTCCA 376136
Query 125659 TAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCA-AG 125717
| || ||||||| || |||||| |||| || | || || | || ||||| |||| |
Sbjct 376137 TCGAGAAAGAGTTCCTCACCGAAGCCCTGCCTTGCCGCCTGCTCGGTATGAA-TGCAGAC 376195
Query 125718 CTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGC 125777
|| |||||| ||||||| |||||||| ||||| || || || | | | ||| |
Sbjct 376196 CTTATGTGCCAGTACATTGAGTTTGTAGCAGACCG-CT--TGCTCATGGCTCTCGGCAAC 376252
Query 125778 ---AAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGT 125834
||| | |||||||| | ||| || || || |||||| | ||| || || | ||
Sbjct 376253 ACAAAGGTGTACAACGCGACGAACCCGTTCGACTTCATGGAGAACATCTCGCTGGCAGGC 376312
Query 125835 AAGACCAACTTTTTCGAGAAG 125855
||||| || || |||||||||
Sbjct 376313 AAGACAAATTTCTTCGAGAAG 376333
Score = 114 bits (126), Expect = 2e-20
Identities = 202/289 (70%), Gaps = 4/289 (1%)
Strand=Plus/Plus
Query 125028 ATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGAC 125087
|||||||| ||||| ||| ||||| ||||| | || ||| |||||||||||||||||
Sbjct 375455 ATGTACAAGAAGGCAATGGCATCCTTCTGGACTGCAGAGGAGATCGATCTGTCCAAGGAC 375514
Query 125088 CTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTG 125147
| || ||| | | ||| | | || ||||| || || |||||||| |
Sbjct 375515 ATTCCTGACTGGAACAACCGTCTTAACGATGACGAGCGCTTCTTCATCTCGCACATCCTC 375574
Query 125148 GCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACGATTC-TCTC 125205
|||||||| |||| || ||||| ||||| ||||| || || || || ||| ||| | |
Sbjct 375575 GCCTTCTTCGCCGCGTCGGATGGCATCGTGAACGAGAACCTAGTCGA-ACGCTTCAGCGC 375633
Query 125206 AAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACG 125265
| ||| | |||||||||| ||||| ||||| ||||| || || ||||||
Sbjct 375634 AGAAGTACA-GATTCCAGAGGCACGCTGCTTCTACGGCTTCCAGATTGCCATGGAGAACA 375692
Query 125266 TGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC 125314
| ||||| || | |||||| || || |||| |||||| |||| ||
Sbjct 375693 TTCACTCCGAGACGTACTCGCTGCTTATCGACACGTACATCAGCGAGCC 375741
>seq8
Length=997024
Score = 98.7 bits (108), Expect = 1e-15
Identities = 150/209 (72%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 70317 TGTATCAGAGGA-GTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCT 70375
|||||||| || |||| ||||||||||| || || || || ||||| || || |
Sbjct 376930 TGTATCAGCGGTCGTGC-GACATGGGCCTAGGCGTGCCGTTCAACATCGCCTCGTACGCG 376988
Query 70376 ATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGC--GCACGAGTTCGTACACA 70433
|| ||||||||||| | || ||| | || ||||| | |||| ||| ||||
Sbjct 376989 TTGCTGACGCACATGCTCGCCCACGTCTGCGACCTGATTCCCGGCAC--GTTGACGCACA 377046
Query 70434 CCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGTGCAACTCGAAC 70493
|||| |||||||| ||||||||| | ||||| ||||| | | || ||||| ||||| |
Sbjct 377047 CCATGGGCGACGCACACGTGTATCTGGATCACGTCGAGGCGCTCAACGTGCAGCTCGAGC 377106
Query 70494 GGGAGCCGAGACCTTTTCCCAAGCTGGAG 70522
| || |||||| |||||| | |||||
Sbjct 377107 GCGAACCGAGAGACTTTCCCGACTTGGAG 377135
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741055800390920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |