Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq23 120 3e-22 >seq23 Length=461238 Score = 120 bits (132), Expect = 3e-22 Identities = 170/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || ||||| | | || | ||| | ||||| |||||| |||||||| | Sbjct 205103 AAAATTTGCATACCTCCGCGAAGACGTAGCACAAGGTGCAGAGTAGACTCCTTTTGAATA 205044 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || || || ||| | ||| || |||||||| || | ||||| | | ||| Sbjct 205043 TTGTAGTCAGACAGAGTACGGCCATCTTCGAGCTGTTTACCAGCGAAGATCAGGCGCTGC 204984 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || ||||| || || || || ||||| | |||||| | ||||||| ||| || ||| Sbjct 204983 TGGTCTGGTGGGATGCCCTCCTTGTCCTGAATTTTGGTCTTGACGTTATCGATGGTATCA 204924 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| |||| ||||||||| |||||||| ||||| || || ||||||||||| Sbjct 204923 GATGACTCGACCTCAAGCGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAGATCTGCAT 204865 Score = 102 bits (112), Expect = 7e-17 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCC 94855 ||||||||||| ||| || |||||||| | ||| || || | | || || || |||| Sbjct 205302 CACCAAGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTC--TGACAGCGTGCGACCATCC 205245 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 ||||| || || || | ||||| || | ||||||||||| |||||||| || ||||| Sbjct 205244 TCCAGTTGCTTACCAGCGAAGATCAAGCGCTGCTGATCTGGTGGAATACCCTCCTTGTCT 205185 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | ||| || | ||| || | | | ||||| | | || || || | ||||| || Sbjct 205184 TGAATCTTGGTCTTCACATTGTCAATCGTGTCTGAGGATTCAACTTCTAGGGTGATCGTC 205125 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || || ||||| || || ||||| Sbjct 205124 TTTCCTGTGAGCGTCTTCACGAAAATTTGCAT 205093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448289143464120