Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23]
367 sequences; 31,780,469 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq34 102 1e-17
seq9 100 4e-17
>seq34
Length=272164
Score = 102 bits (112), Expect = 1e-17
Identities = 106/139 (76%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595
|| |||||||||||| || | |||| | ||| ||||||| || | ||||||| ||| |
Sbjct 153795 TGATCTATGAAGAGACACGCGGTGTTCTCAAGTCCTTCCTCGAGTCGGTTATCCGTGACG 153854
Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655
|| || |||||| ||||| || || || ||||||||||||||| |||| | ||||| |
Sbjct 153855 CTGTCACCTATACTGAGCATGCGAAGCGCAAGACTGTCACCTCCCTGGACGTTGTCTACG 153914
Query 16656 CATTGAAACGTCAAGGCCG 16674
| |||| || || || ||
Sbjct 153915 CCCTGAAGCGCCAGGGTCG 153933
Score = 98.7 bits (108), Expect = 2e-16
Identities = 84/101 (83%), Gaps = 2/101 (2%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||||| || || |||| ||||| | || || |||||||| || ||||||||||| || ||
Sbjct 153626 GCTAAACGCCACCGCAAGATCT-TGCGCGACAACATCCAGGGCATCACCAAGCCTGCCAT 153684
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
||||||||| ||||| ||||| || ||||||||| ||||||
Sbjct 153685 CCGTCGTCTCGCTCGCCGTGGCGGTGTCAAGCGTATCTCTG 153725
>seq9
Length=905162
Score = 100 bits (110), Expect = 4e-17
Identities = 80/94 (85%), Gaps = 2/94 (2%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| |||||||| || | ||| |||||| || ||||| ||||| ||||||||||| |||||
Sbjct 3623 GCCAAGCGTCACCGAAAGAT-TCTTCGCGACAACATTCAAGGTATCACCAAGCCCGCTAT 3681
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGT 16525
|||||||| ||||||||||| || |||||||||
Sbjct 3682 TCGTCGTCTTGCTCGTCGTGGCGGTGTCAAGCGT 3715
Score = 87.8 bits (96), Expect = 3e-13
Identities = 117/163 (72%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 16541 TATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTC 16600
||||| |||| ||||| || |||||| || | | | |||||| | ||| ||| |
Sbjct 3780 TATGAGGAGACTCGTGGCGTGTTGAAGTCGTTTTTGGAAAGCGTTATTCGTGACGCTGTA 3839
Query 16601 CACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTG 16660
||| |||||||| || || | |||||||| ||||| | ||| | |||||||| |
Sbjct 3840 ACCTACACCGAGCATGCCAAGAGGAAGACTGTTACCTCGCTTGATGTTGTCTATGCTCTC 3899
Query 16661 AAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703
|| || |||||||| | | ||||||||||| ||||| |||
Sbjct 3900 AAGCGACAAGGCCGCACTCTGTATGGTTTTGGTGGTTAAGCTT 3942
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79074864449331
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |