Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq34 102 1e-17 seq9 100 4e-17 >seq34 Length=272164 Score = 102 bits (112), Expect = 1e-17 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||||||||||| || | |||| | ||| ||||||| || | ||||||| ||| | Sbjct 153795 TGATCTATGAAGAGACACGCGGTGTTCTCAAGTCCTTCCTCGAGTCGGTTATCCGTGACG 153854 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 || || |||||| ||||| || || || ||||||||||||||| |||| | ||||| | Sbjct 153855 CTGTCACCTATACTGAGCATGCGAAGCGCAAGACTGTCACCTCCCTGGACGTTGTCTACG 153914 Query 16656 CATTGAAACGTCAAGGCCG 16674 | |||| || || || || Sbjct 153915 CCCTGAAGCGCCAGGGTCG 153933 Score = 98.7 bits (108), Expect = 2e-16 Identities = 84/101 (83%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||| || || |||| ||||| | || || |||||||| || ||||||||||| || || Sbjct 153626 GCTAAACGCCACCGCAAGATCT-TGCGCGACAACATCCAGGGCATCACCAAGCCTGCCAT 153684 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||||||||| ||||| ||||| || ||||||||| |||||| Sbjct 153685 CCGTCGTCTCGCTCGCCGTGGCGGTGTCAAGCGTATCTCTG 153725 >seq9 Length=905162 Score = 100 bits (110), Expect = 4e-17 Identities = 80/94 (85%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | ||| |||||| || ||||| ||||| ||||||||||| ||||| Sbjct 3623 GCCAAGCGTCACCGAAAGAT-TCTTCGCGACAACATTCAAGGTATCACCAAGCCCGCTAT 3681 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGT 16525 |||||||| ||||||||||| || ||||||||| Sbjct 3682 TCGTCGTCTTGCTCGTCGTGGCGGTGTCAAGCGT 3715 Score = 87.8 bits (96), Expect = 3e-13 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 16541 TATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTC 16600 ||||| |||| ||||| || |||||| || | | | |||||| | ||| ||| | Sbjct 3780 TATGAGGAGACTCGTGGCGTGTTGAAGTCGTTTTTGGAAAGCGTTATTCGTGACGCTGTA 3839 Query 16601 CACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTG 16660 ||| |||||||| || || | |||||||| ||||| | ||| | |||||||| | Sbjct 3840 ACCTACACCGAGCATGCCAAGAGGAAGACTGTTACCTCGCTTGATGTTGTCTATGCTCTC 3899 Query 16661 AAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 || || |||||||| | | ||||||||||| ||||| ||| Sbjct 3900 AAGCGACAAGGCCGCACTCTGTATGGTTTTGGTGGTTAAGCTT 3942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074864449331