Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq10 215 6e-51 >seq10 Length=848763 Score = 215 bits (238), Expect = 6e-51 Identities = 550/825 (67%), Gaps = 18/825 (2%) Strand=Plus/Plus Query 63216 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATG 63274 ||||||||||| || |||||||| |||| | ||| ||| || ||||| | | | | Sbjct 460852 ACTCGTTTCATGAACAGATCAGGCGTCCACAAAGC-ATAGAAGAGATCACGAGCACGGTT 460910 Query 63275 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63334 || || || || ||||| | || || | | | ||| |||| |||||| || Sbjct 460911 CTCTTCCTTACCGTGGTTCTTGCGCAAGTCAAGCCAGCCAAAAATGTCAGCATGCCATGG 460970 Query 63335 TTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 63394 || | ||| ||||| | | | || || || ||||| || |||||||| | |||| ||| Sbjct 460971 CTCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTTGCCACCCTGATCAACATATCGAGC 461030 Query 63395 GGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGA 63454 |||| || || || | |||||| ||||| | |||||| ||| | || |||||||| Sbjct 461031 GGTGGCATCGTAGACACGCAACATAGGAATTAGACCGTTGGATGTGCCGTTGGTACCACC 461090 Query 63455 GATATAGCTTCCACTGGCACGAATAT----TACTAATTGATAGACCTATTCCCCCTGCCA 63510 || || ||| | |||||||| ||| || | |||| || || || || Sbjct 461091 AATGTACGAACCAGTCGCACGAATGCGGTGTACG--TTCA--GACCGATGCCACCGGCAG 461146 Query 63511 TTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGA 63570 | || || || | || || || | |||||| ||||| ||||||||||| || || Sbjct 461147 TCTTTGAAATCATAGCACAGGTCTTGAGCGTGTCGTAGATGCCCTCTATGCTGTCCTCCT 461206 Query 63571 TCATGTTAAGTAGAAAACAGCTAGACATTTG--GTGACGACTAGTTCCCGCATTAAATAA 63628 |||| | | || || ||| || | || | |||| | || || |||||||| | Sbjct 461207 TCATATCGATGAGGAAGCAGGAGGAGAGCTGCGGCGACGGC--GTGCCAGCATTAAACAG 461264 Query 63629 GGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAA-GTAGATTGTACGTCTCAATAGCTG 63687 || ||||| ||||| || || | || | || | |||| | ||| |||||||| || Sbjct 461265 AGTGGGAGACGCGTGTGTGAAGTACTTATTCGACATGTAG-TCGTAAGTCTCAATGGCAC 461323 Query 63688 AGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTT 63746 || || || || | || || || || || |||||||| | ||||||||| ||||| Sbjct 461324 TCTCAATGTCTTCACCG-TGTATGCCAACCGCAACACGCATAATCATGTGCTGTGGTCTC 461382 Query 63747 TCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAA 63806 || | | |||| || ||| | | |||||| | ||||| ||||| || |||||| Sbjct 461383 TCTGCCACCTTGCCATTGATTCGGAGAAGGTAGGACCTCTCCAATGTTTTGAAGCCAAAA 461442 Query 63807 TAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTG 63866 || | ||| ||||| || ||||||| || ||||||| || | ||| | || Sbjct 461443 TACTGGTAGTTGAAGTCACGGTCGTAAACGATGGCCGAGTTCAGCTCGTCCGCGTGCTTC 461502 Query 63867 TTAACTATATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTA 63926 | | ||||| || | | || || || || | || || || ||||| || || Sbjct 461503 ATGATGATATCATACGTAGTCTTCGAGATCATAGGGCAGTGCTTGCCGTTTTTTGGGTTG 461562 Query 63927 ACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGA 63986 ||||||||| | | ||| || || ||| | |||| | ||||| |||| |||||| || Sbjct 461563 ACATAGTTGTAGAGATCATCGATGACTGCCGAAAATTGCTTTTTAGTTTGCTTGTGAAGG 461622 Query 63987 TTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGT 64031 || ||||||||||| | || || || | || || || |||||| Sbjct 461623 TTCGATACGGCTATACGTGCAGCGAGCACAGCGTAGTCTGGATGT 461667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622944342229720