Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq10 392 8e-104 >seq10 Length=848763 Score = 392 bits (434), Expect = 8e-104 Identities = 1185/1800 (66%), Gaps = 55/1800 (3%) Strand=Plus/Minus Query 363387 TATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTC-GTATCAATGGTGATATTG 363445 |||||| || | || || |||||| |||||||| |||| | |||||||| | | | Sbjct 461444 TATTTT-GGCTTCAAAACATTGGAGAGGTCCTACCT-TCTCCGAATCAATGGCAAGGTGG 461387 Query 363446 TTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTG 363505 || | || ||||| ||| | ||||||||||| |||| || || | || ||| Sbjct 461386 CAGAGAGACCACAGCACATGATTATGCGTGTTGCGGTTGGCATACACGGTGAAGACATTG 461327 Query 363506 ATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTA-----TTCACGCACGCCAC 363560 | || ||||| || || | ||| || ||| || ||||| ||||| | Sbjct 461326 AGAGTGCCATTGAGACTTACGA----CTACATG-TCGAATAAGTACTTCACACACGCGTC 461272 Query 363561 GCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAA 363620 || || ||| |||||||| || | || ||| | || || ||||| || | | Sbjct 461271 TCCCACTCTGTTTAATGCTGGCACGCCGTCGCCGCAGCTCTCCTCCTGCTTCCTCATCGA 461212 Query 363621 AATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTC 363680 |||||||| || ||| ||||| |||| ||||| || |||| |||||| | ||||| Sbjct 461211 TATGAAGGAGGACAGCATAGAGGGCATCTACGACACGCTCAAGACCTGTGCTATGATTTC 461152 Query 363681 CAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC-ACAGAACAGTTAC 363738 |||| ||| || || || ||| | | || | ||| ||||||| || | || || Sbjct 461151 AAAGACTGCCGGTGGCATCGGTCTGAACG-TACACCGCATTCGTGCGACTGGTTCGT-AC 461094 Query 363739 ATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAA 363797 ||| | || || | || | | || || || || |||| ||| | ||||| | || Sbjct 461093 ATTGGTGGTACCAACGGCACA-TCCAACGGTCTAATTCCTATGTTGCGTGTCTACGATGC 461035 Query 363798 TACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCT 363857 || || | || || || |||||||| |||||| || || || || || || || Sbjct 461034 CACCGCTCGATATGTTGATCAGGGTGGCAACAAGCGCCCCGGTGCTTTCGCCATTTACCT 460975 Query 363858 CGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC-ACGGGAA--A 363914 ||||| ||||| || ||||||| | ||||| | || || ||| |||| || | Sbjct 460974 TGAGCCATGGCATGCTGACATTTTTGGCTGGCTTGACTTGCGCAAGAACCACGGTAAGGA 460915 Query 363915 AGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAA 363974 |||| | ||||| |||||||| |||||||| | ||| |||| | || ||||| Sbjct 460914 AGAGAAC---CGTGCTCGTGATCTCTTCTATGCTTTGTGGACGCCTGATCTGTTCATGAA 460858 Query 363975 GCGCGTGGAGGCAGGTAAGAAT-TGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTT 364033 || || || ||| | || ||| ||||||| || || | ||| || || || Sbjct 460857 ACGAGTTGAA-CAGAATGGTATGTGGACACTCTTCTGTCCCAATGAAGCACCTGGCCTCG 460799 Query 364034 CCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGG 364093 ||||||| | || || || | || || |||||||| || || || |||||| | Sbjct 460798 CCGATGTCTACGGCGAAGAGTTTGAGGCCCTATACGAGAAATACGAGAAGGAGGGCCGTG 460739 Query 364094 CTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGA 364153 |||| |||| || | || |||||||| |||| |||||| | | | |||| |||| Sbjct 460738 GTCGTGAGACCATCCGTGCTCAGAAGCTGTGGTATGCCATTCTTCAGGCACAGACCGAGA 460679 Query 364154 CAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACC 364213 | || | |||| ||| | ||||| || | |||||||||||| ||||||| | ||| Sbjct 460678 CTGGCAATCCCTTCATGCTCTACAAGGACGCTTGCAACCGCAAGAGCAACCAGAAAAACC 460619 Query 364214 TTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTGAATACACCGCTCCCGAC 364272 | || || || | |||| | ||||| || |||||||| ||||| ||||| || || ||| Sbjct 460618 TGGGAACCATCC-GCAGCTCCAACCTTTGCACCGAGATCATTGAGTACACTGCCCCAGAC 460560 Query 364273 GAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGA------T 364326 ||| || || |||||| | || || | || || || | ||||| | | | Sbjct 460559 GAGGTCGCGGTGTGTAACTTGGCCTCTCTGGCTCTGCCAACCTTTGTCGATGTCATGCGT 460500 Query 364327 GGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGAC 364386 || | ||| | || | || |||| || ||| |||| | |||| | || Sbjct 460499 GGCGAATACGACTTCAAGAAGCTGCATGAGGTCACCCGCCATGTCGTTCGCAACTTGAAC 460440 Query 364387 AAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CG-AGCGTTCTAATATGCGTC 364444 ||| | ||||||| || | || || | || || || || | | | || ||| | | Sbjct 460439 AAGATCATCGACATTAACCACTACCCTGTACCAGAGGCACGTAACAGT--AACATGAGAC 460382 Query 364445 ATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGG 364504 | || || || ||| | ||||| ||||| || || || | ||| | || | || Sbjct 460381 ACCGTCCTATCGGTGTCGGTGTGCAGGGTCTTGCCGATGCTTTCCTCGCTCTGCGGCTGC 460322 Query 364505 CATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTG 364564 |||| || || || || |||||| | || || | | ||||||||||| || || | Sbjct 460321 CATTCGACTCTCCAGAGGCTCGTATGCTGAACATCCAAATCTTTGAAACCATATACCACG 460262 Query 364565 CCGCAATGACTGCTTCGTGTGAT-TTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAG 364623 |||| |||| ||||||||||| ||| |||| | ||||| || || | ||||||| Sbjct 460261 CCGCTCTGACAGCTTCGTGTGAGCTTGCCAAAGAGCAAGGTCCC-TATTCGAGTTATGAG 460203 Query 364624 GGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTC 364683 || || || | || ||||| | || |||| ||| | ||||| || || ||| ||| Sbjct 460202 GGCTCGCCCGTGTCCCAGGGGATTTTGCAGTATGACATGTGGAACGTGACTCCAACTGAT 460143 Query 364684 CGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCC--- 364740 | ||| ||||||| | || | | | || ||||||||| ||||||||| Sbjct 460142 CTCTGGGACTGGGACAGCCTCAAAGCTGAGATCAAAAAGCATGGTGTCCGCAACTCCTTA 460083 Query 364741 CTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGC 364800 ||||| ||||||||||| || ||||| ||| | |||||||| || |||||||||||| Sbjct 460082 CTCGTG---GCGCCCATGCCAACCGCTTCAACTTCTCAGATCCTGGGTAACAACGAGTGC 460026 Query 364801 TTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTA 364860 ||||| || | ||| || | || ||||| || || || |||| || || | ||| Sbjct 460025 TTCGAGCCATATACCTCAAACATCTACTCACGTCGCGTGCTCGCCGGCGAGTTCCAGGTC 459966 Query 364861 GTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAG 364920 || ||| | | |||| ||||| ||| || ||||| ||||| |||||| Sbjct 459965 GTCAATCCTTGGTTGCTCAAAGATCTCGTTGACATGGGTTTGTGGTCTGACAATATGAAG 459906 Query 364921 AACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTG 364980 ||| ||||| || | |||||| | ||| ||||||| ||||||| ||| | Sbjct 459905 AACCGCATCATTGCGGAGGGTGGTTCGATTCAGCGCATTCCAAACATTCCAGATGATATT 459846 Query 364981 AAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTC----TCATTGATATGGC 365036 || | | ||||| || || |||||||| | || ||| | |||| | ||||| Sbjct 459845 AAAGCATTGTACAAGACGGTCTGGGAAAT----AAGCCAACGCCATGTCATCCAGATGGC 459790 Query 365037 GGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCC 365096 |||||||| || || || || || |||||| | ||| | ||||| | || Sbjct 459789 CGCCGATCGTGGCGCGTTCATTGACCAATCCCAGTCTCTCAACATCCACATGAAGGAACC 459730 Query 365097 AACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 ||| | |||| | || |||||||||||| || ||||| |||||| ||||| || Sbjct 459729 AACGATGGGCAAGATCACCTCCATGCATTTCGCTGGCTGGAAGCTCGGTCTCAAGACTGG 459670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303347471386994