Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq10 197 1e-45 seq15 159 3e-34 seq23 104 2e-17 seq9 89.7 5e-13 seq2 87.8 2e-12 >seq10 Length=848763 Score = 197 bits (218), Expect = 1e-45 Identities = 621/951 (65%), Gaps = 32/951 (3%) Strand=Plus/Plus Query 144845 TTTAGCGATTGGCTTTGATCAATGAAAGCGTTGCGGTCGGCGGCCATCTCAATCATA--- 144901 || || || ||| ||| |||||||| ||| || ||||||||||||| || | | Sbjct 459748 TTGAGAGACTGGGATTGGTCAATGAACGCGCCACGATCGGCGGCCATCTGGATGACATGG 459807 Query 144902 CGTTTGCATTTCATTTCCCAAGCGGTCTTGTACAAACGTTTAATGTGGTCCGGAATGCCG 144961 |||| || | |||||||| | ||||||||||| |||||| | || |||||| Sbjct 459808 CGTTGGCTT---ATTTCCCAGACCGTCTTGTACAATGCTTTAATATCATCTGGAATGTTT 459864 Query 144962 TCAATCGCCTGAATCGACCCCTTGTGCGCAAATATGGCGTTCCGCATTTCGGACGTGTAC 145021 ||| ||||||||| || | ||||| ||| |||| ||| | | | || Sbjct 459865 GGAATGCGCTGAATCGAACCACCCTCCGCAATGATGCGGTTCTTCATATTGTCAGACCAC 459924 Query 145022 AG-----TTTTAACTTGATCAAGTCGTCAATTAAGTACTGATTGACGACCTGAAACTCGC 145076 | | | ||| |||| | ||| ||| ||||||||||||| ||||||| Sbjct 459925 AAACCCATGTCAACGAGATCTTTGAG-CAACCAAG----GATTGACGACCTGGAACTCGC 459979 Query 145077 CGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGC 145136 |||| | ||| ||||| | || | ||| || || | || || || ||||||| || | Sbjct 459980 CGGCGAGCACGCGACGTGAGTAGATGTTTGAGGTATATGGCTCGAAGCACTCGTTGTTAC 460039 Query 145137 CCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACCAATAATGAATTGCGCAGGC 145196 ||||||| |||| || | ||||| |||||| |||||| | ||| || ||||| | | Sbjct 460040 CCAGGATCTGAGAAGTTGAAGCGGTTGGCATGGGCGCCACGAGTAAGGAGTTGCGGACAC 460099 Query 145197 CGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCATAGCGAAGTCGGCCTCACGT 145256 | ||||| ||||| || | || || | |||| ||||| || ||| || |||||| Sbjct 460100 CATGCTTTTTGATCTCAGCTTTGAGGCTGTCCCAGTCCCAGAGATCAGTTGGAGTCACGT 460159 Query 145257 CCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTGCCTTGAAA---GGAACTGT 145313 ||||||||| ||||||||||| |||| | |||| ||| | | | ||| | Sbjct 460160 TCCACATGTCATACTGCAAAATCCCCTGGGACACGGGCGAGCCCTCATAACTCGAATAGG 460219 Query 145314 AAC--TGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCAGAGCGCCGAAATAAATTGT 145371 || ||| | |||||| ||||| || || ||||||| || || || || Sbjct 460220 GACCTTGCTC-----TTTGGCAAGCTCACACGAAGCTGTCAGAGCGGCGTGGTATATGGT 460274 Query 145372 CTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGTACGGCATGCGCAGCAG 145431 || ||||| |||| |||| || || ||| | |||| ||||| Sbjct 460275 TTCAAAGATTTGGATGTTCAGCATACGAGCCTCTGGAGAGTCGAATGGCAGCCGCAGAGC 460334 Query 145432 TACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCCGATGTTTCATGTTGCT 145491 | ||||||||||| || ||||| | || || ||||| || || ||| ||||||| || Sbjct 460335 GAGGAAAGCATCGGCAAGACCCTGCACACCGACACCGATAGGACGGTGTCTCATGTTACT 460394 Query 145492 CATCCTCGCCGACTCG-ATAGGATATCGATTACGGTCGATAATTTTATTCAAGTTTCGCA 145550 | | ||| || | | ||| || | ||| |||||| || || |||||||| || | Sbjct 460395 GTTACGTGCC-TCTGGTACAGGGTAGTGGTTAATGTCGATGATCTTGTTCAAGTTGCGAA 460453 Query 145551 CTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACCGAGCCTCGTCA--ACGAC 145608 | || || | | ||| ||| | ||||| | ||| || || || | Sbjct 460454 CGACATGGCGGGTGACCTCATGCAGCTTCTTGAAGTCGTA-TTCGCCACG-CATGACATC 460511 Query 145609 CACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCT 145668 ||| || | | || | || ||||| ||||| || || ||| || | | | | Sbjct 460512 GACAAAGGTTGGCAGAGCCAGAGAGGCCAAGTTACACACCGCGACCTCGTCTGGGGCAGT 460571 Query 145669 GTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATT 145728 ||| | | |||||||| ||| | ||| | |||||||||||| |||| ||| || Sbjct 460572 GTACTCAATGATCTCGGTGCAAAGGTTGGAGCTGCGGATGGTTCCCAGGTTTTTCTGGTT 460631 Query 145729 ACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTC 145779 || || | |||||| |||||||||||||||||| | || ||||||||| Sbjct 460632 GCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATGAAGGGATTGCCAGTCTC 460682 >seq15 Length=603150 Score = 159 bits (176), Expect = 3e-34 Identities = 349/513 (68%), Gaps = 11/513 (2%) Strand=Plus/Plus Query 46087 CCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACT 46146 || ||| | |||||||| | ||||||||| | |||||| ||||| | | || Sbjct 375842 CCTTGCATTCGCAAGAAGGCTGACTGGGCGCTCCGCTGGATCTCTGACAGCAACTCCACC 375901 Query 46147 TTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTT 46206 |||||| || | | ||||| || ||||||||| |||| || ||||| ||| Sbjct 375902 TTCGCCTCACGCCTCATCGCCTTCGCTGCCGTGGAGGGCATCTTCTTCTCTGGTGCCTTT 375961 Query 46207 GCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGA 46265 || ||||||| | | || || | ||| | ||||||| ||| |||| || |||||| Sbjct 375962 GCTTCCATCTTCTGGCTTAAGAAGCGAGGTC-TCATGCCGGGCTTGACCTTCTCCAACGA 376020 Query 46266 GCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCG 46325 ||| || || ||||||||||| |||| || ||||| || || || || | || Sbjct 376021 GCTCATTTCACGCGACGAGGGTATGCACACCGACTTCGCCTGCCTGCTCTTCAGCATGA- 376079 Query 46326 CGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGTGGCCAT 46385 | || | |||| | || || | |||| ||| ||| ||||| || |||| Sbjct 376080 --TTCAAAATAAGCCGTCTCCAGAGTCGGTGCGTGCCATCATCACCGAGGCTGTCTCCAT 376137 Query 46386 TGAGAAGGAGTTTTTTACGGCCGCACTGCCC-GCTGCCCTGCTGGGCATGAACGCACAGT 46444 ||||| ||||| | || | || ||||| || ||| |||| || ||||| ||| | Sbjct 376138 CGAGAAAGAGTTCCTCACCGAAGCCCTGCCTTGCCGCC-TGCTCGGTATGAATGCAGACC 376196 Query 46445 CAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCT-TCACCAGC-C 46502 |||||| | ||||| ||||||||||| ||||| ||||| || ||| || || | | Sbjct 376197 TTATGTGCCAGTACATTGAGTTTGTAGCAGACCGCTTGCTCATG--GCTCTCGGCAACAC 376254 Query 46503 GAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAA 46562 ||| | ||||| || || || || || ||| | |||||||| |||| ||||| Sbjct 376255 AAAGGTGTACAACGCGACGAACCCGTTCGACTTCATGGAGAACATCTCGCTGGCAGGCAA 376314 Query 46563 AACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 || ||||| ||||| |||||||| ||||| || Sbjct 376315 GACAAATTTCTTCGAGAAGCGCGTTGGCGACTA 376347 >seq23 Length=461238 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | ||| ||||| | || | || |||||||||||||| ||||| || | Sbjct 205091 CCTCCGCGAAGACGTAGCACAAGGTGCAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 205032 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || ||||| || || ||| |||| | ||||||||||| || ||| Sbjct 205031 AGAGTACGGCCATCTTCGAGCTGTTTACCAGCGAAGATCAGGCGCTGCTGGTCTGGTGGG 204972 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||||| ||||| | || | ||||| | ||||||| Sbjct 204971 ATGCCCTCCTTGTCCTGAATTTTGGTCTTGACGTTATCGATGGTATCAGATGACTCGACC 204912 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || ||||| || ||||| |||||||| Sbjct 204911 TCAAGCGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAGATCTGCAT 204865 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| ||||| || || | ||||||||||||||||||||||| || | Sbjct 205319 CCGCCACGGAGACGGAGCACCAAGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCTGAC 205260 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| || ||||| || ||| |||| || |||||||| || || || Sbjct 205259 AGCGTGCGACCATCCTCCAGTTGCTTACCAGCGAAGATCAAGCGCTGCTGATCTGGTGGA 205200 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||| | | || | || || | ||| || | Sbjct 205199 ATACCCTCCTTGTCTTGAATCTTGGTCTTCACATTGTCAATCGTGTCTGAGGATTCAACT 205140 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || || || || || |||||||| ||||| Sbjct 205139 TCTAGGGTGATCGTCTTTCCTGTGAGCGTCTTCACGAAAATTTGCAT 205093 >seq9 Length=905162 Score = 89.7 bits (98), Expect = 5e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 |||||||||||||| |||||||| ||| || ||||| ||||| || |||||||| Sbjct 60873 GTCGACTCCTTTTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCAAGTTGCTTGCCG 60814 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 ||| |||| | |||||||||||| || || || || || ||||| Sbjct 60813 GCGAAGATAAGACGCTGCTGGTCGGGTGGAATACCCTCCTTGTC 60770 >seq2 Length=1312579 Score = 87.8 bits (96), Expect = 2e-12 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| ||||| | |||||| || || ||||||||||| || ||| Sbjct 554488 CCTTCTGGATGTTGTAGTCGCTTAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGA 554547 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | || ||||||||||| || ||||| || |||||||| ||| || ||| | | | Sbjct 554548 TCAAGCGCTGCTGGTCTGGTGGGATACCCTCTTTGTCCTGGATCTTGGTCTTCACATTGT 554607 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | ||||| | ||||| | || | ||| | || || || || || || || |||| Sbjct 554608 CGATCGTATCCGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGA 554667 Query 131225 A 131225 | Sbjct 554668 A 554668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472010634641280