Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23]
367 sequences; 31,780,469 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq10 197 1e-45
seq15 159 3e-34
seq23 104 2e-17
seq9 89.7 5e-13
seq2 87.8 2e-12
>seq10
Length=848763
Score = 197 bits (218), Expect = 1e-45
Identities = 621/951 (65%), Gaps = 32/951 (3%)
Strand=Plus/Plus
Query 144845 TTTAGCGATTGGCTTTGATCAATGAAAGCGTTGCGGTCGGCGGCCATCTCAATCATA--- 144901
|| || || ||| ||| |||||||| ||| || ||||||||||||| || | |
Sbjct 459748 TTGAGAGACTGGGATTGGTCAATGAACGCGCCACGATCGGCGGCCATCTGGATGACATGG 459807
Query 144902 CGTTTGCATTTCATTTCCCAAGCGGTCTTGTACAAACGTTTAATGTGGTCCGGAATGCCG 144961
|||| || | |||||||| | ||||||||||| |||||| | || ||||||
Sbjct 459808 CGTTGGCTT---ATTTCCCAGACCGTCTTGTACAATGCTTTAATATCATCTGGAATGTTT 459864
Query 144962 TCAATCGCCTGAATCGACCCCTTGTGCGCAAATATGGCGTTCCGCATTTCGGACGTGTAC 145021
||| ||||||||| || | ||||| ||| |||| ||| | | | ||
Sbjct 459865 GGAATGCGCTGAATCGAACCACCCTCCGCAATGATGCGGTTCTTCATATTGTCAGACCAC 459924
Query 145022 AG-----TTTTAACTTGATCAAGTCGTCAATTAAGTACTGATTGACGACCTGAAACTCGC 145076
| | | ||| |||| | ||| ||| ||||||||||||| |||||||
Sbjct 459925 AAACCCATGTCAACGAGATCTTTGAG-CAACCAAG----GATTGACGACCTGGAACTCGC 459979
Query 145077 CGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGC 145136
|||| | ||| ||||| | || | ||| || || | || || || ||||||| || |
Sbjct 459980 CGGCGAGCACGCGACGTGAGTAGATGTTTGAGGTATATGGCTCGAAGCACTCGTTGTTAC 460039
Query 145137 CCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACCAATAATGAATTGCGCAGGC 145196
||||||| |||| || | ||||| |||||| |||||| | ||| || ||||| | |
Sbjct 460040 CCAGGATCTGAGAAGTTGAAGCGGTTGGCATGGGCGCCACGAGTAAGGAGTTGCGGACAC 460099
Query 145197 CGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCATAGCGAAGTCGGCCTCACGT 145256
| ||||| ||||| || | || || | |||| ||||| || ||| || ||||||
Sbjct 460100 CATGCTTTTTGATCTCAGCTTTGAGGCTGTCCCAGTCCCAGAGATCAGTTGGAGTCACGT 460159
Query 145257 CCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTGCCTTGAAA---GGAACTGT 145313
||||||||| ||||||||||| |||| | |||| ||| | | | ||| |
Sbjct 460160 TCCACATGTCATACTGCAAAATCCCCTGGGACACGGGCGAGCCCTCATAACTCGAATAGG 460219
Query 145314 AAC--TGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCAGAGCGCCGAAATAAATTGT 145371
|| ||| | |||||| ||||| || || ||||||| || || || ||
Sbjct 460220 GACCTTGCTC-----TTTGGCAAGCTCACACGAAGCTGTCAGAGCGGCGTGGTATATGGT 460274
Query 145372 CTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGTACGGCATGCGCAGCAG 145431
|| ||||| |||| |||| || || ||| | |||| |||||
Sbjct 460275 TTCAAAGATTTGGATGTTCAGCATACGAGCCTCTGGAGAGTCGAATGGCAGCCGCAGAGC 460334
Query 145432 TACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCCGATGTTTCATGTTGCT 145491
| ||||||||||| || ||||| | || || ||||| || || ||| ||||||| ||
Sbjct 460335 GAGGAAAGCATCGGCAAGACCCTGCACACCGACACCGATAGGACGGTGTCTCATGTTACT 460394
Query 145492 CATCCTCGCCGACTCG-ATAGGATATCGATTACGGTCGATAATTTTATTCAAGTTTCGCA 145550
| | ||| || | | ||| || | ||| |||||| || || |||||||| || |
Sbjct 460395 GTTACGTGCC-TCTGGTACAGGGTAGTGGTTAATGTCGATGATCTTGTTCAAGTTGCGAA 460453
Query 145551 CTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACCGAGCCTCGTCA--ACGAC 145608
| || || | | ||| ||| | ||||| | ||| || || || |
Sbjct 460454 CGACATGGCGGGTGACCTCATGCAGCTTCTTGAAGTCGTA-TTCGCCACG-CATGACATC 460511
Query 145609 CACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCT 145668
||| || | | || | || ||||| ||||| || || ||| || | | | |
Sbjct 460512 GACAAAGGTTGGCAGAGCCAGAGAGGCCAAGTTACACACCGCGACCTCGTCTGGGGCAGT 460571
Query 145669 GTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATT 145728
||| | | |||||||| ||| | ||| | |||||||||||| |||| ||| ||
Sbjct 460572 GTACTCAATGATCTCGGTGCAAAGGTTGGAGCTGCGGATGGTTCCCAGGTTTTTCTGGTT 460631
Query 145729 ACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTC 145779
|| || | |||||| |||||||||||||||||| | || |||||||||
Sbjct 460632 GCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATGAAGGGATTGCCAGTCTC 460682
>seq15
Length=603150
Score = 159 bits (176), Expect = 3e-34
Identities = 349/513 (68%), Gaps = 11/513 (2%)
Strand=Plus/Plus
Query 46087 CCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACT 46146
|| ||| | |||||||| | ||||||||| | |||||| ||||| | | ||
Sbjct 375842 CCTTGCATTCGCAAGAAGGCTGACTGGGCGCTCCGCTGGATCTCTGACAGCAACTCCACC 375901
Query 46147 TTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTT 46206
|||||| || | | ||||| || ||||||||| |||| || ||||| |||
Sbjct 375902 TTCGCCTCACGCCTCATCGCCTTCGCTGCCGTGGAGGGCATCTTCTTCTCTGGTGCCTTT 375961
Query 46207 GCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGA 46265
|| ||||||| | | || || | ||| | ||||||| ||| |||| || ||||||
Sbjct 375962 GCTTCCATCTTCTGGCTTAAGAAGCGAGGTC-TCATGCCGGGCTTGACCTTCTCCAACGA 376020
Query 46266 GCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCG 46325
||| || || ||||||||||| |||| || ||||| || || || || | ||
Sbjct 376021 GCTCATTTCACGCGACGAGGGTATGCACACCGACTTCGCCTGCCTGCTCTTCAGCATGA- 376079
Query 46326 CGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGTGGCCAT 46385
| || | |||| | || || | |||| ||| ||| ||||| || ||||
Sbjct 376080 --TTCAAAATAAGCCGTCTCCAGAGTCGGTGCGTGCCATCATCACCGAGGCTGTCTCCAT 376137
Query 46386 TGAGAAGGAGTTTTTTACGGCCGCACTGCCC-GCTGCCCTGCTGGGCATGAACGCACAGT 46444
||||| ||||| | || | || ||||| || ||| |||| || ||||| ||| |
Sbjct 376138 CGAGAAAGAGTTCCTCACCGAAGCCCTGCCTTGCCGCC-TGCTCGGTATGAATGCAGACC 376196
Query 46445 CAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCT-TCACCAGC-C 46502
|||||| | ||||| ||||||||||| ||||| ||||| || ||| || || | |
Sbjct 376197 TTATGTGCCAGTACATTGAGTTTGTAGCAGACCGCTTGCTCATG--GCTCTCGGCAACAC 376254
Query 46503 GAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAA 46562
||| | ||||| || || || || || ||| | |||||||| |||| |||||
Sbjct 376255 AAAGGTGTACAACGCGACGAACCCGTTCGACTTCATGGAGAACATCTCGCTGGCAGGCAA 376314
Query 46563 AACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595
|| ||||| ||||| |||||||| ||||| ||
Sbjct 376315 GACAAATTTCTTCGAGAAGCGCGTTGGCGACTA 376347
>seq23
Length=461238
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|| ||||| | ||| ||||| | || | || |||||||||||||| ||||| || |
Sbjct 205091 CCTCCGCGAAGACGTAGCACAAGGTGCAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 205032
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || || || || ||||| || || ||| |||| | ||||||||||| || |||
Sbjct 205031 AGAGTACGGCCATCTTCGAGCTGTTTACCAGCGAAGATCAGGCGCTGCTGGTCTGGTGGG 204972
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||||| ||||| | || | ||||| | |||||||
Sbjct 204971 ATGCCCTCCTTGTCCTGAATTTTGGTCTTGACGTTATCGATGGTATCAGATGACTCGACC 204912
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | || | ||| || || || ||||| || ||||| ||||||||
Sbjct 204911 TCAAGCGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAGATCTGCAT 204865
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|| || || | ||| ||||| || || | ||||||||||||||||||||||| || |
Sbjct 205319 CCGCCACGGAGACGGAGCACCAAGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCTGAC 205260
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||||| ||||| || ||||| || ||| |||| || |||||||| || || ||
Sbjct 205259 AGCGTGCGACCATCCTCCAGTTGCTTACCAGCGAAGATCAAGCGCTGCTGATCTGGTGGA 205200
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| || || ||| | | || | || || | ||| || |
Sbjct 205199 ATACCCTCCTTGTCTTGAATCTTGGTCTTCACATTGTCAATCGTGTCTGAGGATTCAACT 205140
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | ||| | || || || || || || || |||||||| |||||
Sbjct 205139 TCTAGGGTGATCGTCTTTCCTGTGAGCGTCTTCACGAAAATTTGCAT 205093
>seq9
Length=905162
Score = 89.7 bits (98), Expect = 5e-13
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097
|||||||||||||| |||||||| ||| || ||||| ||||| || ||||||||
Sbjct 60873 GTCGACTCCTTTTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCAAGTTGCTTGCCG 60814
Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141
||| |||| | |||||||||||| || || || || || |||||
Sbjct 60813 GCGAAGATAAGACGCTGCTGGTCGGGTGGAATACCCTCCTTGTC 60770
>seq2
Length=1312579
Score = 87.8 bits (96), Expect = 2e-12
Identities = 128/181 (71%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104
|||| || |||||||| ||||| | |||||| || || ||||||||||| || |||
Sbjct 554488 CCTTCTGGATGTTGTAGTCGCTTAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGA 554547
Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164
| || ||||||||||| || ||||| || |||||||| ||| || ||| | | |
Sbjct 554548 TCAAGCGCTGCTGGTCTGGTGGGATACCCTCTTTGTCCTGGATCTTGGTCTTCACATTGT 554607
Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224
| | ||||| | ||||| | || | ||| | || || || || || || || ||||
Sbjct 554608 CGATCGTATCCGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGA 554667
Query 131225 A 131225
|
Sbjct 554668 A 554668
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472010634641280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |