Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq50 132 3e-26 seq23 89.7 3e-13 >seq50 Length=160357 Score = 132 bits (146), Expect = 3e-26 Identities = 204/291 (70%), Gaps = 0/291 (0%) Strand=Plus/Minus Query 6200 GTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTAT 6259 ||||||||||||||| ||| ||||||| |||| ||||||| ||||| || || || Sbjct 85625 GTTCTACCGCTACAAGATGGAGCGCATCCAGAGCAAGATCGAGGGCAAGGGCAATGGCAT 85566 Query 6260 TAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTA 6319 || |||||||| |||| |||| || || || |||||| ||| || ||| ||| Sbjct 85565 CAAGACCGTCATCCCCAACCTGCCGAGCATCTCTCAGTCGCTCGCACGTCCGCCCAACTA 85506 Query 6320 CCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGA 6379 | || || || ||||| | ||| |||||||||||||| | |||| ||| |||| Sbjct 85505 CGTGATCAAGTACTTCGGCTTCGAGCTTGGCGCTCAGACCAACAAGGATCCCAAGGACGA 85446 Query 6380 GCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTT 6439 || | ||| | ||||| | || || | |||||||| |||||| || || ||||| Sbjct 85445 CCGGTGGATCATCAACGGTGCTCACGACGCCGCCAAGCTTCAGGACCACCTCGATGGCTT 85386 Query 6440 TATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 || | || ||||| || | | ||| | ||||||||||| || || Sbjct 85385 CATCAACCGCTTCGTGCTATGCAAGCAGTGCAAAAACCCGGAGACGGATCT 85335 >seq23 Length=461238 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || | | ||| | ||| | || ||||| |||||||||||||||||| |||| Sbjct 205093 TACCTCCGCGAAGACGTAGCACAAGGTGCAGAGTAGACTCCTTTTGAATATTGTAGTCAG 205034 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| | ||| | || || | ||||| || || || || ||||| || || || | | Sbjct 205033 ACAGAGTACGGCCATCTTCGAGCTGTTTACCAGCGAAGATCAGGCGCTGCTGGTCTGGTG 204974 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||| || |||||| |||||| ||| || || | || ||||| || | Sbjct 204973 GGATGCCCTCCTTGTCCTGAATTTTGGTCTTGACGTTATCGATGGTATCAGATGACTCGA 204914 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || || || |||| || || ||||| |||||||| Sbjct 204913 CCTCAAGCGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAGATCTGCAT 204865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334945701843977