Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq10 221 2e-52 >seq10 Length=848763 Score = 221 bits (244), Expect = 2e-52 Identities = 598/903 (66%), Gaps = 18/903 (2%) Strand=Plus/Plus Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052 || ||||| || || | |||| | | || ||||| ||||| ||||| | | | | Sbjct 460774 TCAAACTCTTCGCCGTAGACATCGGCGAGGCCAGGTGCTTCATTGGGACAGAAGAGTGTC 460833 Query 63053 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 63111 ||| || | | | ||||||||||| || |||||||| |||| | ||| ||| || Sbjct 460834 CACATACCATTCTGTTCAACTCGTTTCATGAACAGATCAGGCGTCCACAAAGC-ATAGAA 460892 Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171 ||||| | | | | || || || || ||||| | || || | | | Sbjct 460893 GAGATCACGAGCACGGTTCTCTTCCTTACCGTGGTTCTTGCGCAAGTCAAGCCAGCCAAA 460952 Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231 ||| |||| |||||| || || | ||| ||||| | | | || || || ||||| || || Sbjct 460953 AATGTCAGCATGCCATGGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTTGCCACC 461012 Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291 |||||| | |||| ||||||| || || || | |||||| ||||| | ||| ||||| Sbjct 461013 CTGATCAACATATCGAGCGGTGGCATCGTAGACACGCAACATAGGAATTAGACCGTTGGA 461072 Query 63292 TGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATAT----TACTAATTGATA 63347 ||| || ||||| || || || ||| | |||||||| ||| || | Sbjct 461073 TGTGCCGTTGGTACCACCAATGTACGAACCAGTCGCACGAATGCGGTGTACG--TTCA-- 461128 Query 63348 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 63407 |||| || || || || | || || || | || || || | ||| || ||||||| Sbjct 461129 GACCGATGCCACCGGCAGTCTTTGAAATCATAGCACAGGTCTTGAGCGTGTCGTAGATGC 461188 Query 63408 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG--GTGACGACT 63465 ||||||| || || ||| |||| | | || || ||| || | || | |||| | Sbjct 461189 CCTCTATGCTGTCCTCCTTCATATCGATGAGGAAGCAGGAGGAGAGCTGCGGCGACGGC- 461247 Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAA-GTAGAT 63524 || || |||||||| | || ||||| ||||| || || | || | || | |||| | Sbjct 461248 -GTGCCAGCATTAAACAGAGTGGGAGACGCGTGTGTGAAGTACTTATTCGACATGTAG-T 461305 Query 63525 TGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATT 63583 ||| |||||||| || || || || || | || || || || || |||||||| Sbjct 461306 CGTAAGTCTCAATGGCACTCTCAATGTCTTCACCG-TGTATGCCAACCGCAACACGCATA 461364 Query 63584 AACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63643 | ||||||||| ||||| || | | |||| || ||| | | |||||| | ||| Sbjct 461365 ATCATGTGCTGTGGTCTCTCTGCCACCTTGCCATTGATTCGGAGAAGGTAGGACCTCTCC 461424 Query 63644 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTG 63703 || ||||| || |||||||| | ||| ||||| || ||||||| || ||||||| Sbjct 461425 AATGTTTTGAAGCCAAAATACTGGTAGTTGAAGTCACGGTCGTAAACGATGGCCGAGTTC 461484 Query 63704 AGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTTGAAATAATAGGAAAATGT 63763 || | ||| | || | | | ||| ||| | | || || ||||| | || Sbjct 461485 AGCTCGTCCGCGTGCTTCATGATGATATCATACGTAGTCTTCGAGATCATAGGGCAGTGC 461544 Query 63764 TTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttt 63823 || || ||||| || |||||||||||| | | ||| || || ||| | |||| | ||| Sbjct 461545 TTGCCGTTTTTTGGGTTGACATAGTTGTAGAGATCATCGATGACTGCCGAAAATTGCTTT 461604 Query 63824 tttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGA 63883 || |||| ||||| || || ||||||||||| | || || || | || || || ||| Sbjct 461605 TTAGTTTGCTTGTGAAGGTTCGATACGGCTATACGTGCAGCGAGCACAGCGTAGTCTGGA 461664 Query 63884 TGT 63886 ||| Sbjct 461665 TGT 461667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633629093213200