Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq23 114 1e-20 seq2 84.2 2e-11 >seq23 Length=461238 Score = 114 bits (126), Expect = 1e-20 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| |||| || || ||||||| | || || ||||| ||| Sbjct 204865 ATGCAGATCTTCGTCAAGACTCTGACTGGAAAGACCATCACGCTTGAGGTCGAGTCATCT 204924 Query 25059 GACACTATCGAGTCAC-TGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || ||||| | || | ||| | |||| ||| ||||| || || || ||||| |||| Sbjct 204925 GATACCATCGA-TAACGTCAAGACCAAAATTCAG-GACAAGGAGGGCATCCCACCAGACC 204982 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || || || || ||||| | ||||||| || ||| || || |||| Sbjct 204983 AGCAGCGCCTGATCTTCGCTGGTAAACAGCTCGAAGATGGCCGTACTCTGTCTGACTACA 205042 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||||| || || || || || | |||||| | || | ||||| Sbjct 205043 ATATTCAAAAGGAGTCTACTCTGCACCTTGTGCTACGTCTTCGCGGAGG 205091 >seq2 Length=1312579 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067 || || ||||| | || || || | ||||| | || ||||||||||| || || ||| Sbjct 554668 TTCGTGAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCGGATACGATC 554609 Query 25068 GAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATT 25127 || ||||| || ||| |||||||| || || ||||| ||||| ||||| | Sbjct 554608 GACAATGTGAAGACCAAGATCCAGGACAAAGAGGGTATCCCACCAGACCAGCAGCGCTTG 554549 Query 25128 ATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAA 25186 || ||||| ||||| || | ||||||| ||||| | |||| ||||| || || || Sbjct 554548 ATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTAAGCGACTACAACATCCAGAA 554490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433326061805105