Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq23 116 3e-21 seq9 105 6e-18 >seq23 Length=461238 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || | || || || ||| |||| || ||||| ||| || | Sbjct 205093 ATGCAAATTTTCGTGAAGACGCTCACAGGAAAGACGATCACCCTAGAAGTTGAATCCTCA 205152 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || | || || |||||||||||||||||||||||||| ||||| Sbjct 205153 GACACGATTGACAATGTGAAGACCAAGATTCAAGACAAGGAGGGTATTCCACCAGATCAG 205212 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || || || || || | |||||| ||||| | || || |||||| Sbjct 205213 CAGCGCTTGATCTTCGCTGGTAAGCAACTGGAGGATGGTCGCACGCTGTCAGACTACAAC 205272 Query 22399 ATTCAAAAAGAATCCAC 22415 |||||||| || || || Sbjct 205273 ATTCAAAAGGAGTCGAC 205289 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | || || || || |||| ||||| || || | | Sbjct 204865 ATGCAGATCTTCGTCAAGACTCTGACTGGAAAGACCATCACGCTTGAGGTCGAGTCATCT 204924 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | |||| |||||||| ||||||||||| || ||||| || || Sbjct 204925 GATACCATCGATAACGTCAAGACCAAAATTCAGGACAAGGAGGGCATCCCACCAGACCAG 204984 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || || |||||| | || ||| ||| || | || || ||||| Sbjct 204985 CAGCGCCTGATCTTCGCTGGTAAACAGCTCGAAGATGGCCGTACTCTGTCTGACTACAAT 205044 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| || || || | || | || | || | ||||||||| Sbjct 205045 ATTCAAAAGGAGTCTACTCTGCACCTTGTGCTACGTCTTCGCGGAGGT 205092 >seq9 Length=905162 Score = 105 bits (116), Expect = 6e-18 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 22308 TCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTT 22367 || |||||||||||||||||||||||| || || |||||||| || |||||||| || | Sbjct 60766 TCCAGACAAGGAGGGTATTCCACCCGACCAGCAGCGTCTTATCTTCGCCGGCAAGCAACT 60825 Query 22368 AGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 |||||| |||||| | ||||| |||||||| ||||| || || || Sbjct 60826 TGAGGATGGCCGCACTTTGTCCGACTACAACATCCAAAAGGAGTCGAC 60873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419726122635355