Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq15 136 8e-27 seq1 96.9 7e-15 >seq15 Length=603150 Score = 136 bits (150), Expect = 8e-27 Identities = 260/383 (68%), Gaps = 0/383 (0%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 ||||||||||| | |||||| |||| ||||| ||||||||||||||| ||||| || Sbjct 376329 TCGAAGAAATTTGTCTTGCCTGCCAGCGAGATGTTCTCCATGAAGTCGAACGGGTTCGTC 376270 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || |||||| ||| | | ||| || || | || | ||||||||| |||||||| | Sbjct 376269 GCGTTGTACACCTTTGTGTTGCCGAGAGCCATGAGCAAGCGGTCTGCTACAAACTCAATG 376210 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| | ||| || || | ||||| || | || || ||||| | || || || | Sbjct 376209 TACTGGCACATAAGGTCTGCATTCATACCGAGCAGGCGGCAAGGCAGGGCTTCGGTGAGG 376150 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || || || ||| ||| || ||||| | || || |||| | ||||| || Sbjct 376149 AACTCTTTCTCGATGGAGACAGCCTCGGTGATGATGGCACGCACCGACTCTGGAGACGGC 376090 Query 251803 TTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCGA 251862 || || | | | | | | || || | | || | ||||| |||||||||||| Sbjct 376089 TTATTTTGAATCATGCTGAAGAGCAGGCAGGCGAAGTCGGTGTGCATACCCTCGTCGCGT 376030 Query 251863 CTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAG 251922 |||| ||||||||| | || ||| ||||| | || || ||| | ||||||||| Sbjct 376029 GAAATGAGCTCGTTGGAGAAGGTCAAGCCCGGCATGAGACCTCGCTTCTTAAGCCAGAAG 375970 Query 251923 ATTGCGCAAAAGGATCCAGAGAA 251945 || | ||||| |||||||| Sbjct 375969 ATGGAAGCAAAGGCACCAGAGAA 375947 >seq1 Length=1367393 Score = 96.9 bits (106), Expect = 7e-15 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 279708 TCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATGTC 279767 || |||||||||||||||||||| ||||| |||| ||||| | |||| |||||||| Sbjct 223709 TCTGGTGGTTGGAAGATGAAGCTTGCCCTTGCTCGAGCCATGTTGATGCGAGCCGATGTG 223650 Query 279768 CTACTGCTTGATGAGCCAACCAACCACATGGAC 279800 || ||||| ||||| |||||||| ||| ||||| Sbjct 223649 CTTCTGCTGGATGAACCAACCAATCACTTGGAC 223617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027831966918647