Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23]
367 sequences; 31,780,469 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq23 161 2e-34
seq15 134 3e-26
seq9 100 5e-16
seq2 98.7 2e-15
>seq23
Length=461238
Score = 161 bits (178), Expect = 2e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||||||||| || | || | ||| || || ||||| ||||| || || || || ||
Sbjct 205091 CCTCCGCGAAGACGTAGCACAAGGTGCAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 205032
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||| | ||| || || ||||| || || | || ||||| |||||
Sbjct 205031 AGAGTACGGCCATCTTCGAGCTGTTTACCAGCGAAGATCAGGCGCTGCTGGTCTGGTGGG 204972
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| ||||| || | ||||||| |||||||| || | ||| || ||
Sbjct 204971 ATGCCCTCCTTGTCCTGAATTTTGGTCTTGACGTTATCGATGGTATCAGATGACTCGACC 204912
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||||| ||||| || || ||||||||||| ||||||||
Sbjct 204911 TCAAGCGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAGATCTGCAT 204865
Score = 149 bits (164), Expect = 1e-30
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||||||| || || ||||| ||||| ||||| || || ||
Sbjct 205319 CCGCCACGGAGACGGAGCACCAAGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCTGAC 205260
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | ||||| || ||||| || | | || || || ||||||
Sbjct 205259 AGCGTGCGACCATCCTCCAGTTGCTTACCAGCGAAGATCAAGCGCTGCTGATCTGGTGGA 205200
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||||||||||||||| | ||| || || || ||||||| ||||| |||
Sbjct 205199 ATACCCTCCTTGTCTTGAATCTTGGTCTTCACATTGTCAATCGTGTCTGAGGATTCAACT 205140
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||| || ||||| ||||| ||||| ||||| || |||||
Sbjct 205139 TCTAGGGTGATCGTCTTTCCTGTGAGCGTCTTCACGAAAATTTGCAT 205093
Score = 102 bits (112), Expect = 2e-16
Identities = 121/164 (74%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
|| || ||||| || ||||| || || | || ||||| | ||| || || ||||| ||
Sbjct 204650 TTCTGAATGTTGTAGTCGGACAGAGTGCGGCCGTCTTCGAGCTGTTTACCAGCGAAGATC 204591
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
|| | || ||||| ||||| ||||| |||||||| |||||||| | ||| || |||
Sbjct 204590 AGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGAATCTTGGTCTTAACATTGTCG 204531
Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437
|||||||| | || || || || | ||||||||| || || ||
Sbjct 204530 ATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGT 204487
>seq15
Length=603150
Score = 134 bits (148), Expect = 3e-26
Identities = 319/473 (67%), Gaps = 12/473 (3%)
Strand=Plus/Minus
Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994
|||||| || ||||||||||| || || || ||||||||| || | |||||| |
Sbjct 376366 CATGACACCGGCCTTCTGGTAGTCGCCAACGCGCTTCTCGAAGAAATTTGTCTTGCCTGC 376307
Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054
|| || ||| |||||||||||| || |||||| ||| || ||| | || ||
Sbjct 376306 CAGCGAGATGTTCTCCATGAAGTCGAACGGGTTCGTCGCGTTGTACACCTTTGTGTTGCC 376247
Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114
||| || ||| | |||||| || || ||||| |||||||||| ||| ||||| | ||
Sbjct 376246 GAGAGCCATGAGCAAGCGGTCTGCTACAAACTCAATGTACTGGCACATAAGGTCTGCATT 376187
Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174
||| || | || |||||| || | ||| ||| | ||| || || ||| ||| ||| ||
Sbjct 376186 CATACCGAGCAGGCGGCAAGGCAGGGCTTCGGTGAGGAACTCTTTCTCGATGGAGACAGC 376127
Query 10175 TTCCTCGACGATGCTCTTTACCACGTCAAGGGACAGCTTGTTCTCGAGCTT--CGAATA- 10231
|| || |||| ||| || | ||| |||| || | | | | ||| |
Sbjct 376126 CTCGGTGATGATGGCACGCACCGACTCTGGAGACGGCTTATTTTGAATCATGCTGAAGAG 376067
Query 10232 CAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAA 10291
||| || | || | | ||| | ||||||||||| |||| ||||||||| ||
Sbjct 376066 CAG--GCAGGCGAAGTCGGT-GTGCATACCCTCGTCGCGTGAAATGAGCTCGTTGGAGAA 376010
Query 10292 ACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGG-CGCAGAACGACCCGG 10350
|| || |||||||| || || || |||||||| |||| ||| || | || |
Sbjct 376009 GGTCAAGCCCGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGAAGCA-AAGGCACCAG 375951
Query 10351 AGAACAGAAGA--CCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGG 10401
||| |||||| ||||||||| | |||||| |||||| |||||||
Sbjct 375950 AGA--AGAAGATGCCCTCCACGGCAGCGAAGGCGATGAGGCGTGAGGCGAAGG 375900
>seq9
Length=905162
Score = 100 bits (110), Expect = 5e-16
Identities = 105/138 (76%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| || | || | ||| ||||| ||||| ||||||||||| || |||||
Sbjct 60903 CCACCACGAAGTCGAAGGACAAGGTGCAGCGTCGACTCCTTTTGGATGTTGTAGTCGGAC 60844
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| || | ||||| || | ||||| |||||||| || || | || ||||||||||||
Sbjct 60843 AAAGTGCGGCCATCCTCAAGTTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGTGGA 60784
Query 68355 ATGCCTTCCTTGTCTTGA 68372
|| || ||||||||| ||
Sbjct 60783 ATACCCTCCTTGTCTGGA 60766
>seq2
Length=1312579
Score = 98.7 bits (108), Expect = 2e-15
Identities = 129/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
|| |||||||| || ||| || || | |||||||| | |||||| || || || ||
Sbjct 554490 TTCTGGATGTTGTAGTCGCTTAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATC 554549
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
| | || ||||| ||||| || || || ||||| || ||||| | ||| || |||
Sbjct 554550 AAGCGCTGCTGGTCTGGTGGGATACCCTCTTTGTCCTGGATCTTGGTCTTCACATTGTCG 554609
Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452
|| || || | || || || || | |||||| || || |||||||||||||| |||||
Sbjct 554610 ATCGTATCCGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAA 554668
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921618172057240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |