Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq23 107 2e-18 >seq23 Length=461238 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || |||||||| ||||| || || |||||| |||||| || ||||||||| Sbjct 205061 GTAGACTCCTTTTGAATATTGTAGTCAGACAGAGTACGGCCATCTTCGAGCTGTTTACCA 205002 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGT-TT 114304 ||| |||| || ||||| ||||| || || ||||| || ||||| ||| ||| || || Sbjct 205001 GCGAAGATCAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGAAT-TTTGGTCTT 204943 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | || | ||| || | || ||||| || | || | || || || |||||||| Sbjct 204942 GACGTTATCGATGGTATCAGATGACTCGACCTCAAGCGTGATGGTCTTTCCAGTCAGAGT 204883 Query 114365 TTTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 204882 CTTGACGAAGATCTGCAT 204865 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||||||||| || | | || || || | || || || |||||||||||||| || Sbjct 205320 ACCGCCACGGAGACGGAGCACCAAGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCTGA 205261 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || || ||| ||| || ||||| ||||||||| |||| | ||||| || || || || Sbjct 205260 CAGCGTGCGACCATCCTCCAGTTGCTTACCAGCGAAGATCAAGCGCTGCTGATCTGGTGG 205201 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| || || ||||| |||||| || | | |||| ||||| | |||||| || Sbjct 205200 AATACCCTCCTTGTCTTGAATCTTGGTCTTCACATTGTCAATCGTGTCTGAGGATTCAAC 205141 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | ||| || || || || || || || ||||| ||||| Sbjct 205140 TTCTAGGGTGATCGTCTTTCCTGTGAGCGTCTTCACGAAAATTTGCAT 205093 Score = 96.9 bits (106), Expect = 3e-15 Identities = 123/167 (74%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 114195 TTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATG 114254 || ||||||||||| ||| || ||| || ||||| || |||||||||||| |||| Sbjct 204650 TTCTGAATGTTGTAGTCGGACAGAGTGCGGCCGTCTTCGAGCTGTTTACCAGCGAAGATC 204591 Query 114255 AGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTC 114313 || ||||| ||||| || || ||||| || ||||| |||| || || ||| | | || Sbjct 204590 AGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGAATC-TTGGTCTTAACATTGTC 204532 Query 114314 AACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCA 114360 | |||||||| || ||||| || | ||| | || ||||| |||| Sbjct 204531 GATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGTCA 204485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420132520817604