Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq15 248 2e-60 seq10 194 3e-44 >seq15 Length=603150 Score = 248 bits (274), Expect = 2e-60 Identities = 367/512 (72%), Gaps = 25/512 (5%) Strand=Plus/Plus Query 42645 AAGAAGGCGGACTGGGCGCTCAACTGGATC---GAGAGTCCCGACGCAACGTTCGGCGAG 42701 |||||||| |||||||||||| ||||||| || || | || | || |||| | Sbjct 375854 AAGAAGGCTGACTGGGCGCTCCGCTGGATCTCTGACAG---CAACTCCACCTTCGCCTCA 375910 Query 42702 AGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATC 42761 | || | ||||| | ||||| ||||||||||||||||| || ||||| || |||||| Sbjct 375911 CGCCTCATCGCCTTCGCTGCCGTGGAGGGCATCTTCTTCTCTGGTGCCTTTGCTTCCATC 375970 Query 42762 TTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAG 42820 |||||||| ||| || |||| || ||||| || | |||||||| ||||| ||||| Sbjct 375971 TTCTGGCTTAAGAAGCGAGGTCTC-ATGCCGGGCTTGACCTTCTCCAACGAGCTCATTTC 376029 Query 42821 CAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCA 42880 | |||||||| |||| | ||||| |||||||| || ||| ||| | | Sbjct 376030 ACGCGACGAGGGTATGCACACCGACTTCGCCTGCCTGCTCTTC---AGCATGATTCAAAA 376086 Query 42881 CAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGA 42940 ||||| || ||| ||| || ||||||||||| ||||| || |||||||| || Sbjct 376087 TAAGCCGTCTCCAGAGTCGGTGCGTGCCATCATCACCGAGGCTGTCTCCATCGAGAAAGA 376146 Query 42941 GTTCCTCACGCAGTCGCTGCCCGTGTC-CCTGGTCGGCATGAACCACGACCTCATGTGCA 42999 ||||||||| | | ||| || || | |||| |||| ||||| ||||| |||||| Sbjct 376147 GTTCCTCACCGAAGCCCTG-CCTTGCCGCCTGCTCGGTATGAATGCAGACCTTATGTGCC 376205 Query 43000 AGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGC------C 43053 ||||||| ||| || || ||| | | || | |||| |||| || | Sbjct 376206 AGTACATTGAGTTTGTAGCAGAC---CGCTTG---CTCATGGCTCTCGGCAACACAAAGG 376259 Query 43054 TCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCA 43113 | |||||| || || ||| |||||||| ||||||||||||||| ||| |||||||| | Sbjct 376260 TGTACAACGCGACGAACCCGTTCGACTTCATGGAGAACATCTCGCTGGCAGGCAAGACAA 376319 Query 43114 ACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 | || |||||||||||||| | |||||||||| Sbjct 376320 ATTTCTTCGAGAAGCGCGTTGGCGACTACCAG 376351 Score = 136 bits (150), Expect = 7e-27 Identities = 205/288 (71%), Gaps = 5/288 (2%) Strand=Plus/Plus Query 42301 TCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGG 42360 ||||| ||||||||||||||| | ||| |||||| || |||||||| || ||| Sbjct 375447 TCTGGCGCATGTACAAGAAGGCAATGGCATCCTTCTGGACTGCAGAGGAGATCGATCTGT 375506 Query 42361 CCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCAAA 42416 ||||||||| | | |||| | || |||| | || |||| || ||| || Sbjct 375507 CCAAGGACATTCCTGACTGGAACA-ACCGTCTTAACGATGACGAGCGCTTCTTCATCTCG 375565 Query 42417 AACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG 42476 |||| || |||||||||||||| || || ||||| || || |||||||| | | | Sbjct 375566 CACATCCTCGCCTTCTTCGCCGCGTCGGATGGCATCGTGAACGAGAACCTAGTCGAACGC 375625 Query 42477 TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536 |||| ||| || ||| ||||| ||||||||||||||||||||||| ||||| Sbjct 375626 TTCAGCGCAGAAGTACAGATTCCAGAGGCACGCTGCTTCTACGGCTTCCAGATTGCCATG 375685 Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATC 42584 |||||| | ||||| ||| |||| | || || ||||||||||| Sbjct 375686 GAGAACATTCACTCCGAGACGTACTCGCTGCTTATCGACACGTACATC 375733 >seq10 Length=848763 Score = 194 bits (214), Expect = 3e-44 Identities = 873/1364 (64%), Gaps = 51/1364 (4%) Strand=Plus/Plus Query 244091 TTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGC 244150 || || ||||| ||||| || | |||||||| || ||||| ||| | | ||| Sbjct 459961 TTGACGACCTGGAACTCGCCGGCGAGCACGCGACGTGAGTAGATGTTTGAGGTATATGGC 460020 Query 244151 TCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACC 244210 |||| || ||| |||| ||||| ||||| | || || || |||||||||| ||| Sbjct 460021 TCGAAGCACTCGTTGTTACCCAGGATCTGAGAAGTTGAAGCGGTTGGCATGGGCGCCACG 460080 Query 244211 AGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAG-TCTGAGCTCGTTCCAGTCCCA 244269 || | ||| | || || ||| | | ||| | || | |||| || ||||||||| Sbjct 460081 AGTAAGGAGTTGCGGACACCATGCTTTTTGAT-CTCAGCTTTGAGGCTGTCCCAGTCCCA 460139 Query 244270 CATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCT 244329 | | || | || |||| |||||||||| |||||| | ||||| | Sbjct 460140 GAGATC--AGTTGGAGTCACGTT-------CCACATGTCATACTGCAAAATCCCCTGGGA 460190 Query 244330 GACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTG-GGCCAGCTTACA----G 244384 ||||| |||||| || ||| |||||||| | || || ||| |||| ||| | Sbjct 460191 CACGGGCGAGCCCTCATAACTCGAATAGGGACCTT-GCTCTTTGGCAAGCTCACACGAAG 460249 Query 244385 CTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCC 244444 || || || ||||||| ||| ||||| || ||||| |||||| || ||| Sbjct 460250 CTGTC----AGAGCGGCGTGGTATATGGTTTCAAAGATTTGGATGTTCAGCATACGAGCC 460305 Query 244445 T-TGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCC 244503 | || | || ||| || | | || | ||| | ||||| || |||||||| || Sbjct 460306 TCTGGAG-AGTCGAATGGCAGCCGCAGAGCGAGGAAAGCATCGGCAAGACCCTGCACACC 460364 Query 244504 GATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTT 244563 || ||||| || | ||||| | |||| | || || || || ||||| ||| Sbjct 460365 GACACCGATAGGACGGTGTCTCATGTTACTGTTACGTGCCTCTGGTACAGGGTAGTGGTT 460424 Query 244564 GCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATG-CGGACGACGTCGGCCAGCAGCT 244622 |||||| | |||||| | |||||| || |||| ||| ||| || |||| || Sbjct 460425 AATGTCGATGATCTTGTTCAAGTTGCGAACGA-CATGGCGGGTGACCTCATGCAGCTTCT 460483 Query 244623 GAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTG--AGGGC 244680 |||||||| ||| || || ||| ||| ||||| |||| || || Sbjct 460484 TGAAGTCGTATTCG-------CCACGC--ATGAC-ATCG--ACAAAG--GTTGGCAGAGC 460529 Query 244681 GACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGT 244740 | ||||| ||| || || || ||||| || | | ||||||| | |||||||| Sbjct 460530 CAGAGAGGCCAAGTTACACACCGCGACCTCGTCTGGGGCAGTGTACTCAATGATCTCGGT 460589 Query 244741 GCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGC 244800 ||| ||||| || |||||| ||||||| | || ||| |||| |||||| || Sbjct 460590 GCAAAGGTTGGAGCTGCGGATGGTTCCCAGGTTTTTCTGGTTGCTCTTGCGGTTGCAAGC 460649 Query 244801 GTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCA 244860 ||||||||||||||||||||| || |||||| ||| || || | | | ||| Sbjct 460650 GTCCTTGTAGAGCATGAAGGGATTGCCAGTCTCGGTCTGTGCCTGAAGAATGGCATACCA 460709 Query 244861 GAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAG 244920 || | | ||| || ||| ||| | |||||| |||||| ||| || Sbjct 460710 CAGCTTCTGAGCACGGATGGTCTCACGACCACGGCCCTCCTTCTCGTATTTCTCGTATAG 460769 Query 244921 GGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCC-GGGGCACGACGCCGGGCACATGA 244979 |||||| ||||| ||| |||| ||| | ||||| || || | || || | || Sbjct 460770 GGCCTCAAACTCTTCGCCGTAGACATCGGCGAGGCCAGGTGCTTCA-TTGGGACAGAAGA 460828 Query 244980 GACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCT 245039 | ||||| || | | || | | |||||| || || || |||| | || | Sbjct 460829 GTGTCCACATACCATTCTGTTCAACTCGTTTCATGAACAGATCAGGCGTCCACAAAGCAT 460888 Query 245040 GGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGT 245099 |||||| || | | | | ||| ||| || |||||| | || || | || Sbjct 460889 AGAAGAGATCACGAGCACGGTTCTCTTCCTTACCGTGGTTCTTGCGCAAGTCAAGCCAGC 460948 Query 245100 CAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGC 245159 |||| | ||| | ||||| ||||| | ||| | |||| || ||||| |||||||||| Sbjct 460949 CAAAAATGTCAGCATGCCATGGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTTGC 461008 Query 245160 CTCCCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATG 245215 | ||||| | || | | |||||| || | | ||| |||| |||| | || Sbjct 461009 CACCCTG----ATCAACATATCGAGCGGTGGCATCGTAGACACGCAACATAGGAATTAGA 461064 Query 245216 CCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATG 245275 ||||| || ||||||||| || ||||| | || | | | | | | | | Sbjct 461065 CCGTTGGATGTGCCGTTGGTACCACCAATGTACGAACCAGTCGCACGAATGCGGTGTACG 461124 Query 245276 GACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCT 245335 || || | || ||||| ||| || || | || ||| |||||| ||||| Sbjct 461125 TTCAGACCGATGCCACCGGCAGTCTTTGAAATCATAGCACAGGTCTTGAGCGTGTCGTAG 461184 Query 245336 ATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTG 245395 |||||||| ||||||||| |||||| | || || ||||||||||| ||||| ||| Sbjct 461185 ATGCCCTCTATGCTGTCCTCCTTCATATCGATGAGGAAGCAGGAGGAGAGCTGCGGCGAC 461244 Query 245396 GGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTA 245439 || ||| | || ||||||||||| ||||| || ||||| Sbjct 461245 GGCGTGCCAGCATTAAACAGAGTGGGAGACGCGTGTGTGAAGTA 461288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944334867843920