Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23]
367 sequences; 31,780,469 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq15 248 2e-60
seq10 194 3e-44
>seq15
Length=603150
Score = 248 bits (274), Expect = 2e-60
Identities = 367/512 (72%), Gaps = 25/512 (5%)
Strand=Plus/Plus
Query 42645 AAGAAGGCGGACTGGGCGCTCAACTGGATC---GAGAGTCCCGACGCAACGTTCGGCGAG 42701
|||||||| |||||||||||| ||||||| || || | || | || |||| |
Sbjct 375854 AAGAAGGCTGACTGGGCGCTCCGCTGGATCTCTGACAG---CAACTCCACCTTCGCCTCA 375910
Query 42702 AGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATC 42761
| || | ||||| | ||||| ||||||||||||||||| || ||||| || ||||||
Sbjct 375911 CGCCTCATCGCCTTCGCTGCCGTGGAGGGCATCTTCTTCTCTGGTGCCTTTGCTTCCATC 375970
Query 42762 TTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAG 42820
|||||||| ||| || |||| || ||||| || | |||||||| ||||| |||||
Sbjct 375971 TTCTGGCTTAAGAAGCGAGGTCTC-ATGCCGGGCTTGACCTTCTCCAACGAGCTCATTTC 376029
Query 42821 CAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCA 42880
| |||||||| |||| | ||||| |||||||| || ||| ||| | |
Sbjct 376030 ACGCGACGAGGGTATGCACACCGACTTCGCCTGCCTGCTCTTC---AGCATGATTCAAAA 376086
Query 42881 CAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGA 42940
||||| || ||| ||| || ||||||||||| ||||| || |||||||| ||
Sbjct 376087 TAAGCCGTCTCCAGAGTCGGTGCGTGCCATCATCACCGAGGCTGTCTCCATCGAGAAAGA 376146
Query 42941 GTTCCTCACGCAGTCGCTGCCCGTGTC-CCTGGTCGGCATGAACCACGACCTCATGTGCA 42999
||||||||| | | ||| || || | |||| |||| ||||| ||||| ||||||
Sbjct 376147 GTTCCTCACCGAAGCCCTG-CCTTGCCGCCTGCTCGGTATGAATGCAGACCTTATGTGCC 376205
Query 43000 AGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGC------C 43053
||||||| ||| || || ||| | | || | |||| |||| || |
Sbjct 376206 AGTACATTGAGTTTGTAGCAGAC---CGCTTG---CTCATGGCTCTCGGCAACACAAAGG 376259
Query 43054 TCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCA 43113
| |||||| || || ||| |||||||| ||||||||||||||| ||| |||||||| |
Sbjct 376260 TGTACAACGCGACGAACCCGTTCGACTTCATGGAGAACATCTCGCTGGCAGGCAAGACAA 376319
Query 43114 ACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145
| || |||||||||||||| | ||||||||||
Sbjct 376320 ATTTCTTCGAGAAGCGCGTTGGCGACTACCAG 376351
Score = 136 bits (150), Expect = 7e-27
Identities = 205/288 (71%), Gaps = 5/288 (2%)
Strand=Plus/Plus
Query 42301 TCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGG 42360
||||| ||||||||||||||| | ||| |||||| || |||||||| || |||
Sbjct 375447 TCTGGCGCATGTACAAGAAGGCAATGGCATCCTTCTGGACTGCAGAGGAGATCGATCTGT 375506
Query 42361 CCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCAAA 42416
||||||||| | | |||| | || |||| | || |||| || ||| ||
Sbjct 375507 CCAAGGACATTCCTGACTGGAACA-ACCGTCTTAACGATGACGAGCGCTTCTTCATCTCG 375565
Query 42417 AACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG 42476
|||| || |||||||||||||| || || ||||| || || |||||||| | | |
Sbjct 375566 CACATCCTCGCCTTCTTCGCCGCGTCGGATGGCATCGTGAACGAGAACCTAGTCGAACGC 375625
Query 42477 TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536
|||| ||| || ||| ||||| ||||||||||||||||||||||| |||||
Sbjct 375626 TTCAGCGCAGAAGTACAGATTCCAGAGGCACGCTGCTTCTACGGCTTCCAGATTGCCATG 375685
Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATC 42584
|||||| | ||||| ||| |||| | || || |||||||||||
Sbjct 375686 GAGAACATTCACTCCGAGACGTACTCGCTGCTTATCGACACGTACATC 375733
>seq10
Length=848763
Score = 194 bits (214), Expect = 3e-44
Identities = 873/1364 (64%), Gaps = 51/1364 (4%)
Strand=Plus/Plus
Query 244091 TTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGC 244150
|| || ||||| ||||| || | |||||||| || ||||| ||| | | |||
Sbjct 459961 TTGACGACCTGGAACTCGCCGGCGAGCACGCGACGTGAGTAGATGTTTGAGGTATATGGC 460020
Query 244151 TCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACC 244210
|||| || ||| |||| ||||| ||||| | || || || |||||||||| |||
Sbjct 460021 TCGAAGCACTCGTTGTTACCCAGGATCTGAGAAGTTGAAGCGGTTGGCATGGGCGCCACG 460080
Query 244211 AGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAG-TCTGAGCTCGTTCCAGTCCCA 244269
|| | ||| | || || ||| | | ||| | || | |||| || |||||||||
Sbjct 460081 AGTAAGGAGTTGCGGACACCATGCTTTTTGAT-CTCAGCTTTGAGGCTGTCCCAGTCCCA 460139
Query 244270 CATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCT 244329
| | || | || |||| |||||||||| |||||| | ||||| |
Sbjct 460140 GAGATC--AGTTGGAGTCACGTT-------CCACATGTCATACTGCAAAATCCCCTGGGA 460190
Query 244330 GACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTG-GGCCAGCTTACA----G 244384
||||| |||||| || ||| |||||||| | || || ||| |||| ||| |
Sbjct 460191 CACGGGCGAGCCCTCATAACTCGAATAGGGACCTT-GCTCTTTGGCAAGCTCACACGAAG 460249
Query 244385 CTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCC 244444
|| || || ||||||| ||| ||||| || ||||| |||||| || |||
Sbjct 460250 CTGTC----AGAGCGGCGTGGTATATGGTTTCAAAGATTTGGATGTTCAGCATACGAGCC 460305
Query 244445 T-TGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCC 244503
| || | || ||| || | | || | ||| | ||||| || |||||||| ||
Sbjct 460306 TCTGGAG-AGTCGAATGGCAGCCGCAGAGCGAGGAAAGCATCGGCAAGACCCTGCACACC 460364
Query 244504 GATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTT 244563
|| ||||| || | ||||| | |||| | || || || || ||||| |||
Sbjct 460365 GACACCGATAGGACGGTGTCTCATGTTACTGTTACGTGCCTCTGGTACAGGGTAGTGGTT 460424
Query 244564 GCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATG-CGGACGACGTCGGCCAGCAGCT 244622
|||||| | |||||| | |||||| || |||| ||| ||| || |||| ||
Sbjct 460425 AATGTCGATGATCTTGTTCAAGTTGCGAACGA-CATGGCGGGTGACCTCATGCAGCTTCT 460483
Query 244623 GAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTG--AGGGC 244680
|||||||| ||| || || ||| ||| ||||| |||| || ||
Sbjct 460484 TGAAGTCGTATTCG-------CCACGC--ATGAC-ATCG--ACAAAG--GTTGGCAGAGC 460529
Query 244681 GACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGT 244740
| ||||| ||| || || || ||||| || | | ||||||| | ||||||||
Sbjct 460530 CAGAGAGGCCAAGTTACACACCGCGACCTCGTCTGGGGCAGTGTACTCAATGATCTCGGT 460589
Query 244741 GCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGC 244800
||| ||||| || |||||| ||||||| | || ||| |||| |||||| ||
Sbjct 460590 GCAAAGGTTGGAGCTGCGGATGGTTCCCAGGTTTTTCTGGTTGCTCTTGCGGTTGCAAGC 460649
Query 244801 GTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCA 244860
||||||||||||||||||||| || |||||| ||| || || | | | |||
Sbjct 460650 GTCCTTGTAGAGCATGAAGGGATTGCCAGTCTCGGTCTGTGCCTGAAGAATGGCATACCA 460709
Query 244861 GAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAG 244920
|| | | ||| || ||| ||| | |||||| |||||| ||| ||
Sbjct 460710 CAGCTTCTGAGCACGGATGGTCTCACGACCACGGCCCTCCTTCTCGTATTTCTCGTATAG 460769
Query 244921 GGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCC-GGGGCACGACGCCGGGCACATGA 244979
|||||| ||||| ||| |||| ||| | ||||| || || | || || | ||
Sbjct 460770 GGCCTCAAACTCTTCGCCGTAGACATCGGCGAGGCCAGGTGCTTCA-TTGGGACAGAAGA 460828
Query 244980 GACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCT 245039
| ||||| || | | || | | |||||| || || || |||| | || |
Sbjct 460829 GTGTCCACATACCATTCTGTTCAACTCGTTTCATGAACAGATCAGGCGTCCACAAAGCAT 460888
Query 245040 GGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGT 245099
|||||| || | | | | ||| ||| || |||||| | || || | ||
Sbjct 460889 AGAAGAGATCACGAGCACGGTTCTCTTCCTTACCGTGGTTCTTGCGCAAGTCAAGCCAGC 460948
Query 245100 CAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGC 245159
|||| | ||| | ||||| ||||| | ||| | |||| || ||||| ||||||||||
Sbjct 460949 CAAAAATGTCAGCATGCCATGGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTTGC 461008
Query 245160 CTCCCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATG 245215
| ||||| | || | | |||||| || | | ||| |||| |||| | ||
Sbjct 461009 CACCCTG----ATCAACATATCGAGCGGTGGCATCGTAGACACGCAACATAGGAATTAGA 461064
Query 245216 CCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATG 245275
||||| || ||||||||| || ||||| | || | | | | | | | |
Sbjct 461065 CCGTTGGATGTGCCGTTGGTACCACCAATGTACGAACCAGTCGCACGAATGCGGTGTACG 461124
Query 245276 GACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCT 245335
|| || | || ||||| ||| || || | || ||| |||||| |||||
Sbjct 461125 TTCAGACCGATGCCACCGGCAGTCTTTGAAATCATAGCACAGGTCTTGAGCGTGTCGTAG 461184
Query 245336 ATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTG 245395
|||||||| ||||||||| |||||| | || || ||||||||||| ||||| |||
Sbjct 461185 ATGCCCTCTATGCTGTCCTCCTTCATATCGATGAGGAAGCAGGAGGAGAGCTGCGGCGAC 461244
Query 245396 GGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTA 245439
|| ||| | || ||||||||||| ||||| || |||||
Sbjct 461245 GGCGTGCCAGCATTAAACAGAGTGGGAGACGCGTGTGTGAAGTA 461288
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944334867843920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |