Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq8 120 3e-22 >seq8 Length=997024 Score = 120 bits (132), Expect = 3e-22 Identities = 200/288 (69%), Gaps = 1/288 (0%) Strand=Plus/Minus Query 20372 AACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACATA 20431 |||| ||| || || || | ||||| | || ||| || ||||||||||| | || Sbjct 376831 AACATGTGGCAAGGTGGCAAGGCCATTTTCTTCAGGTCGGCGGGGTTCCACGCGCTCAGG 376772 Query 20432 ATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAATTGGTCA 20491 ||||| | | ||||| ||| || || || | ||| | | || || | ||||| Sbjct 376771 ATGATGCGCCGATCGTACGGCTTGTTCTTGAGCTTATCGATCACGTCCGCGAGCTGGTCC 376712 Query 20492 AACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCAC 20551 | ||||| || ||||| || | || |||||| |||||| |||| || ||||| | |||| Sbjct 376711 ACACCCTGCCCCGTATAATCCGTATGCGCGTCGACGTACTCCGCTCCGAAGTGACGCCAC 376652 Query 20552 TGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCAGGCCGCGCCCGGCC 20611 |||||||| || || || || | || ||||| ||||||| | || ||| || | Sbjct 376651 TGGAAACCATATACGGGACCGAGGTCGCCCTCTTCTCTGTGCCCGAGACCGTTGGCGTCG 376592 Query 20612 AGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGA-CTCCTGTTCT 20658 |||||||| | | ||||| |||||| ||||||| |||||||| Sbjct 376591 AGGAACTCTCGGCTCCCATTGCCGTCCCAGATCTTGATGCCCTGTTCT 376544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441370775202280