Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq23 129 1e-24 seq15 91.5 3e-13 >seq23 Length=461238 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| ||||| ||||| | || || || || ||||| | ||||| || |||||| Sbjct 205055 TCCTTTTGAATATTGTAGTCAGACAGAGTACGGCCATCTTCGAGCTGTTTACCAGCGAAG 204996 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| ||||| || |||||| || || || ||||| ||||| | || ||||| Sbjct 204995 ATCAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGAATTTTGGTCTTGACGTTA 204936 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || || || || |||||||| ||||| || ||||||||||||||| Sbjct 204935 TCGATGGTATCAGATGACTCGACCTCAAGCGTGATGGTCTTTCCAGTCAGAGTCTTGACG 204876 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 204875 AAGATCTGCAT 204865 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| || || ||||| | |||||||| || || || | ||| || || |||||| Sbjct 205283 TCCTTTTGAATGTTGTAGTCTGACAGCGTGCGACCATCCTCCAGTTGCTTACCAGCGAAG 205224 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||||| ||| ||| || || || || || || || || | ||||| || Sbjct 205223 ATCAAGCGCTGCTGATCTGGTGGAATACCCTCCTTGTCTTGAATCTTGGTCTTCACATTG 205164 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || ||||| ||||| || ||||||||||| || || || ||||| ||| Sbjct 205163 TCAATCGTGTCTGAGGATTCAACTTCTAGGGTGATCGTCTTTCCTGTGAGCGTCTTCACG 205104 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 205103 AAAATTTGCAT 205093 Score = 93.3 bits (102), Expect = 1e-13 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || || || || ||||||| || ||||| |||||||| | ||||| || ||||||||| Sbjct 204650 TTCTGAATGTTGTAGTCGGACAGAGTGCGGCCGTCTTCGAGCTGTTTACCAGCGAAGATC 204591 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 || ||||| || |||||| || || || ||||| || || | || || || || Sbjct 204590 AGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGAATCTTGGTCTTAACATTGTCG 204531 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCA 288451 || | ||| ||| || || ||||| ||||| ||||| || |||| Sbjct 204530 ATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGTCA 204485 >seq15 Length=603150 Score = 91.5 bits (100), Expect = 3e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 269150 TGATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCT 269209 || ||||||||||||| || || ||| || || || || || || || || || | Sbjct 376176 TGCTCGGTATGAATGCAGACCTTATGTGCCAGTACATTGAGTTTGTAGCAGACCGCTTGC 376235 Query 269210 TCACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAAC 269269 ||| ||| ||||| | || |||||||| ||| ||| || |||| ||| ||||| Sbjct 376236 TCATGGCTCTCGGCAACACAAAGGTGTACAACGCGACGAACCCGTTCGACTTCATGGAGA 376295 Query 269270 TAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCA-ACGT 269328 || ||||| | ||| ||||| || |||||||| ||||| || ||||||| || | | Sbjct 376296 ACATCTCGCTGGCAGGCAAGACAAATTTCTTCGAGAAGCGCGTTGGCGACTACCAGAAGG 376355 Query 269329 CCTGGTGTAATG 269340 || ||||| ||| Sbjct 376356 CC-GGTGTCATG 376366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179648853043826