Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23]
367 sequences; 31,780,469 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq23 129 1e-24
seq15 91.5 3e-13
>seq23
Length=461238
Score = 129 bits (142), Expect = 1e-24
Identities = 143/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| ||||| ||||| ||||| | || || || || ||||| | ||||| || ||||||
Sbjct 205055 TCCTTTTGAATATTGTAGTCAGACAGAGTACGGCCATCTTCGAGCTGTTTACCAGCGAAG 204996
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
||||| ||||| || |||||| || || || ||||| ||||| | || |||||
Sbjct 204995 ATCAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGAATTTTGGTCTTGACGTTA 204936
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | ||| || || || || |||||||| ||||| || |||||||||||||||
Sbjct 204935 TCGATGGTATCAGATGACTCGACCTCAAGCGTGATGGTCTTTCCAGTCAGAGTCTTGACG 204876
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 204875 AAGATCTGCAT 204865
Score = 102 bits (112), Expect = 2e-16
Identities = 137/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| ||||| || || ||||| | |||||||| || || || | ||| || || ||||||
Sbjct 205283 TCCTTTTGAATGTTGTAGTCTGACAGCGTGCGACCATCCTCCAGTTGCTTACCAGCGAAG 205224
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|||| ||||| ||| ||| || || || || || || || || | ||||| ||
Sbjct 205223 ATCAAGCGCTGCTGATCTGGTGGAATACCCTCCTTGTCTTGAATCTTGGTCTTCACATTG 205164
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | || ||||| ||||| || ||||||||||| || || || ||||| |||
Sbjct 205163 TCAATCGTGTCTGAGGATTCAACTTCTAGGGTGATCGTCTTTCCTGTGAGCGTCTTCACG 205104
Query 288463 AATATCTGCAT 288473
|| || |||||
Sbjct 205103 AAAATTTGCAT 205093
Score = 93.3 bits (102), Expect = 1e-13
Identities = 120/166 (72%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345
|| || || || ||||||| || ||||| |||||||| | ||||| || |||||||||
Sbjct 204650 TTCTGAATGTTGTAGTCGGACAGAGTGCGGCCGTCTTCGAGCTGTTTACCAGCGAAGATC 204591
Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405
|| ||||| || |||||| || || || ||||| || || | || || || ||
Sbjct 204590 AGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGAATCTTGGTCTTAACATTGTCG 204531
Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCA 288451
|| | ||| ||| || || ||||| ||||| ||||| || ||||
Sbjct 204530 ATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGTCA 204485
>seq15
Length=603150
Score = 91.5 bits (100), Expect = 3e-13
Identities = 137/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 269150 TGATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCT 269209
|| ||||||||||||| || || ||| || || || || || || || || || |
Sbjct 376176 TGCTCGGTATGAATGCAGACCTTATGTGCCAGTACATTGAGTTTGTAGCAGACCGCTTGC 376235
Query 269210 TCACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAAC 269269
||| ||| ||||| | || |||||||| ||| ||| || |||| ||| |||||
Sbjct 376236 TCATGGCTCTCGGCAACACAAAGGTGTACAACGCGACGAACCCGTTCGACTTCATGGAGA 376295
Query 269270 TAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCA-ACGT 269328
|| ||||| | ||| ||||| || |||||||| ||||| || ||||||| || | |
Sbjct 376296 ACATCTCGCTGGCAGGCAAGACAAATTTCTTCGAGAAGCGCGTTGGCGACTACCAGAAGG 376355
Query 269329 CCTGGTGTAATG 269340
|| ||||| |||
Sbjct 376356 CC-GGTGTCATG 376366
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179648853043826
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |