Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq10 230 3e-55 seq15 114 2e-20 >seq10 Length=848763 Score = 230 bits (254), Expect = 3e-55 Identities = 1172/1831 (64%), Gaps = 67/1831 (4%) Strand=Plus/Plus Query 113588 GCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGC 113647 |||| || || || |||||||| || |||||||| || |||||||| || | |||| Sbjct 459646 GCCTGTGTACGCAGATAGTACATGCCAGTCTTGAGACCGAGCTTCCAGCCAGCGAAATGC 459705 Query 113648 ATCGAGGACAACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGA 113707 || |||| | |||| | ||||| | |||| || ||| | | |||||||| Sbjct 459706 ATGGAGGTGATCTTGCCCATCGTTGGTTCCTTCATGTGGATGTTGAGAGACTGGGATTGG 459765 Query 113708 TCGATGAA-GCGTCCACGATCCGCCGCCATATCAATCACATC-CTTCATCTTGATTTCCC 113765 || ||||| ||| |||||||| || ||||| | || |||| | | ||| ||||||| Sbjct 459766 TCAATGAACGCG-CCACGATCGGCGGCCATCTGGATGACATGGCGTTGGCTT-ATTTCCC 459823 Query 113766 ACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGC 113825 | || || |||| | |||||||||||||| || | || || || || | Sbjct 459824 AGACCGTCTTGTACAATGCTTTAATATCATCTGGAATGTTTGGAATGCGCTGAATCGAAC 459883 Query 113826 CACCCGCCTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGAT 113885 ||||| || | ||| | | |||||||| | ||||| | ||| || | ||||| Sbjct 459884 CACCCTCCGCAATGATGCGGTTCTTCATATTGTCAGACCACAAACCCATGTCAACGAGAT 459943 Query 113886 CCT----CCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTC-TCAG 113940 | | | || | | | |||||| || ||||| || ||||| ||| | | || Sbjct 459944 CTTTGAGCAACCA-AGG---ATTGACGACCTGGAACTCGCCGGCGAGCACGCGACGTGAG 459999 Query 113941 ATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGA 114000 ||||| || | || |||||||| |||||||| |||||||||| ||| || | || || Sbjct 460000 -TAGATGTTTGAGGTATATGGCTCGAAGCACTCGTTGTTACCCAGGATCTGAGAAGTTGA 460058 Query 114001 GGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACC---CTTTTCCCTAATGCG 114057 || || |||||||| |||| ||| | | ||| |||| ||| ||||| | || Sbjct 460059 AGCGGTTGGCATGGGCGCCACGAGTAAGGAGTTGCGGACACCATGCTTTT---TGATCTC 460115 Query 114058 TTCCTTGAGGGCGTCCCAGTCGTAGTTGAGC-TTTGTCTCCCCCTGCCACATATCAAACT 114116 | |||||| ||||||||| || || | ||| | | | |||||| ||| ||| Sbjct 460116 AGCTTTGAGGCTGTCCCAGTCCCAG-AGATCAGTTGGAGTCACGTTCCACATGTCATACT 460174 Query 114117 GGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTAT-GGGCCCTCAACCTCC 114175 | | || || ||||| | ||||| ||||| || |||| || ||| ||| || Sbjct 460175 GCAAAATCCCCTGGGACACGGGCGAGCCCTC--ATAACTCGAATAGGGACCTTGCTCTTT 460232 Query 114176 GCCA-----ATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAG 114230 | || | || |||| | || || ||||| || || || ||||| || | Sbjct 460233 GGCAAGCTCACACGAAGCTGTC----AGAGCGGCGTGGTATATGGTTTCAAAGATTTGGA 460288 Query 114231 CATTCATTGCCT--TGGCCTCGTCGGAATCAAACGCGAGTCGGCACA-AAATAAATACAT 114287 |||| || | ||||| || || || | || | ||| | | || ||| Sbjct 460289 TGTTCA--GCATACGAGCCTCTGGAGAGTCGAATGGCAG-CCGCAGAGCGAGGAAAGCAT 460345 Query 114288 CCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGG 114347 | || ||||| || ||||||| || || || || |||||||| ||| || || || Sbjct 460346 CGGCAAGACCCTGCACACCGACACCGATAGGACGGTGTCTCATGTTACTGTTACGTGC-C 460404 Query 114348 TCT-CCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTT 114406 ||| || || || || | ||||| | | | || | || |||| Sbjct 460405 TCTGGTACAGGGTAGTGGTTAATGTCGATGATCTTGTTCAAGTTGCGAACGACATGGCGG 460464 Query 114407 GTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGA 114466 |||| ||||| ||||| | | | || | || | | ||| |||| | | || Sbjct 460465 GTGACCTCATGCAGCTTCTTGAAGTCGTATTCGCCACGCATGACATCGACAAAGGTTGGC 460524 Query 114467 AGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATT 114526 || || | || |||| |||||||| | | ||| || |||||||||| || || Sbjct 460525 AGAGCCAGAGAGGCCAAGTTACACACCGCGACCTCGTCTGGGGCAGTGTACTCAATGATC 460584 Query 114527 TCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTA 114586 || || || | || || || ||||| |||| ||| || || || ||| ||| Sbjct 460585 TCGGTGCAAAGGTTGGAGCTGCGGATGGTTCCCAGGTTTTTCTGGTTGCTCTTGCGGTTG 460644 Query 114587 CACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCC 114646 || || |||||||| |||||| | || | || ||||| || || | || ||||| || Sbjct 460645 CAAGCGTCCTTGTAGAGCATGAAGGGATTGCCAGTCTCGGTCTGTGCCTGAAGAATGGCA 460704 Query 114647 TTCCAGACATCGGCGGCTG-GCACAG-TGG---CGTTGGCTCGCCCCTCCTCCTCGTACT 114701 | ||| | || ||| |||| | ||| | | || ||||||| |||||| | Sbjct 460705 TACCA-----CAGCTTCTGAGCACGGATGGTCTCACGACCACGGCCCTCCTTCTCGTATT 460759 Query 114702 TTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTG 114761 | ||| ||||| ||||||||||| || | | || | ||| || ||||| | || | Sbjct 460760 TCTCGTATAGGGCCTCAAACTCTTCGCCGTAGACATCGGCGAGGCCAGGTGCTTCATTGG 460819 Query 114762 GGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCC 114821 | |||||||| | ||| |||| || ||||| || |||||||| || || || ||| Sbjct 460820 GACAGAAGAGTGTCCACATACCATTCTGTTCAACTCGTTTCATGAACAGATCAGGCGTCC 460879 Query 114822 AGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACT 114881 | | ||| |||||||||| ||| || ||||| | || || || ||||| | Sbjct 460880 ACAAAGCATAGAAGAGATCACGAGCACGGTTCTCTTCCTTACCGTGGTTCTTGCGCAAGT 460939 Query 114882 CCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-AC-----C 114935 | | || | | || || || ||||| || || ||||| | |||| | || | Sbjct 460940 CAAGCCAGCCAAAAATGTCAGCATGCCATGGCTCAAGGTAAATGGCGAAAGCACCGGGGC 460999 Query 114936 CCTTACGACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTG 114995 ||| | | ||| |||| | ||||| | || ||||||| | || || | ||| | Sbjct 461000 GCTT--GTTG-CCACCCTGATCAACATATCGAGCGGTGGCATCGTAGACACGCAACATAG 461056 Query 114996 GAATGATACCATCAGATTGGCCATTTGTCCCCCGAA--TACGAGACTTATTGGCTCTGAC 115053 |||| | ||| | ||| ||| || || || | || ||||| || | | || | | Sbjct 461057 GAATTAGACCGTTGGATGTGCCGTTGGTACCACCAATGTACGA-AC-CAGTCGCACGAAT 461114 Query 115054 ATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAG 115113 || | || || ||| || || || || |||||| || || || | |||| Sbjct 461115 GCGGTGTACGTTCAGACCGATGCCACCGGCAGTCTTTGAAATCATAGCACAGGTCTTGAG 461174 Query 115114 ACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACAT 115173 || ||||||| || || || ||| |||| | |||| ||||||||| || | Sbjct 461175 CGTGTCGTAGATGCCCTCTATGCTGTCCTCCTTCATATCGATGAGGAAGCAGGAGGAGAG 461234 Query 115174 TTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-T 115232 || ||| || || ||||| || || || || || | |||||| |||| ||| | | Sbjct 461235 CTGCGGCGACGGCGTGCCAGCATTAAACAGAGTGGGAGACGCGTGTGTGAA-GTACTTAT 461293 Query 115233 GGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCG 115292 ||||| | ||||| ||||| | | | ||||||||| ||||| || || | || Sbjct 461294 TCGACATGTAGTCGTAAGTCTCAATGGCACTCTCAATGTCTTCACCGTGTATGCCAACCG 461353 Query 115293 AGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGT 115352 || ||||||| ||||| || ||| | || || | |||| || | | |||| Sbjct 461354 CAACACGCATAATCATGTGCTGTGGTCTCTCTGCCACCTTGCCATTGATTCGGAGAAGGT 461413 Query 115353 AACTCTTCTCCAAGGTCTTGAGACCAAAATA 115383 | | ||||||| || |||| |||||||| Sbjct 461414 AGGACCTCTCCAATGTTTTGAAGCCAAAATA 461444 >seq15 Length=603150 Score = 114 bits (126), Expect = 2e-20 Identities = 288/438 (66%), Gaps = 0/438 (0%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| ||||| |||||||||||||| |||||||| || ||| ||| |||||||| Sbjct 376348 GTAGTCGCCAACGCGCTTCTCGAAGAAATTTGTCTTGCCTGCCAGCGAGATGTTCTCCAT 376289 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACG 125877 || || || |||||| | | ||| | | ||| || | |||| | || Sbjct 376288 GAAGTCGAACGGGTTCGTCGCGTTGTACACCTTTGTGTTGCCGAGAGCCATGAGCAAGCG 376229 Query 125878 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 125937 || | || |||||||||||| |||| || | |||||||||| ||| || Sbjct 376228 GTCTGCTACAAACTCAATGTACTGGCACATAAGGTCTGCATTCATACCGAGCAGGCGGCA 376169 Query 125938 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGTG 125997 || || || || || |||| | ||||| || || || || | |||||| | Sbjct 376168 AGGCAGGGCTTCGGTGAGGAACTCTTTCTCGATGGAGACAGCCTCGGTGATGATGGCACG 376109 Query 125998 AATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCTTG 126057 | | || || |||| | | | ||||||| ||| || || Sbjct 376108 CACCGACTCTGGAGACGGCTTATTTTGAATCATGCTGAAGAGCAGGCAGGCGAAGTCGGT 376049 Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| | ||||||||| || || ||||| || || |||||| || || ||||||||||| Sbjct 376048 GTGCATACCCTCGTCGCGTGAAATGAGCTCGTTGGAGAAGGTCAAGCCCGGCATGAGACC 375989 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||| | |||||| || | | ||| | ||| ||||||||||| |||||||| Sbjct 375988 TCGCTTCTTAAGCCAGAAGATGGAAGCAAAGGCACCAGAGAAGAAGATGCCCTCCACGGC 375929 Query 126178 CGCGAACGCAAAGAGACG 126195 ||||| || | ||| || Sbjct 375928 AGCGAAGGCGATGAGGCG 375911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597350859640360