Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq23 131 2e-25 >seq23 Length=461238 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | | ||| | ||| | |||| || |||||||||||||||||| |||| Sbjct 205092 ACCTCCGCGAAGACGTAGCACAAGGTGCAGAGTAGACTCCTTTTGAATATTGTAGTCAGA 205033 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 |||||| || | || || ||||| ||||||||||| || || ||||||||||| | ||| Sbjct 205032 CAGAGTACGGCCATCTTCGAGCTGTTTACCAGCGAAGATCAGGCGCTGCTGGTCTGGTGG 204973 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | || |||||||||| ||| |||| || |||| | | | || || || || | Sbjct 204972 GATGCCCTCCTTGTCC-TGAATTTTGGTCTTGACGTTATCGATGGTATCAGATGACTCGA 204914 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | ||||||||| || || || || ||||| || ||||| ||||| Sbjct 204913 CCTCAAGCGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAGATCTGCAT 204865 Score = 105 bits (116), Expect = 7e-18 Identities = 124/165 (75%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 42021 TTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATG 42080 || ||||| ||||| || | |||||| || |||| || ||||| ||||||||||| || Sbjct 204650 TTCTGAATGTTGTAGTCGGACAGAGTGCGGCCGTCTTCGAGCTGTTTACCAGCGAAGATC 204591 Query 42081 AGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-C 42139 || ||||||||||| | ||| | || |||||||||| ||| | || || | | | | | | Sbjct 204590 AGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCC-TGAATCTTGGTCTTAACATTGTC 204532 Query 42140 CACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 42184 | |||||| ||| || || |||| |||||||| ||||| || Sbjct 204531 GATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGT 204487 Score = 105 bits (116), Expect = 7e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41980 GACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAG 42039 |||| || | | ||| | |||||| |||| || |||||||||||| ||||| || | Sbjct 205321 GACCGCCACGGAGACGGAGCACCAAGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCTG 205262 Query 42040 CCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTG 42099 ||| || || | || || || |||||||||||||| || | |||||||| || | || Sbjct 205261 ACAGCGTGCGACCATCCTCCAGTTGCTTACCAGCGAAGATCAAGCGCTGCTGATCTGGTG 205202 Query 42100 GCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCC 42158 | | | |||||||| | ||| | || || || | | | | |||||| ||||| Sbjct 205201 GAATACCCTCCTTGT-CTTGAATCTTGGTCTTCACATTGTCAATCGTGTCTGAGGATTCA 205143 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | ||||| || || || || |||||||| || || |||||||| Sbjct 205142 ACTTCTAGGGTGATCGTCTTTCCTGTGAGCGTCTTCACGAAAATTTGCAT 205093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543210308011280