Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq10 203 3e-47 >seq10 Length=848763 Score = 203 bits (224), Expect = 3e-47 Identities = 966/1517 (64%), Gaps = 36/1517 (2%) Strand=Plus/Minus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | || |||| ||||||||| |||||| ||| ||||| ||| || ||||| Sbjct 461453 AACTACCAGTATTTTGGCTTCAAAACATTGGAGAGGTCCTACCTTCTCCGAATCAATGGC 461394 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | ||| | ||| |||| || || || | ||||| || || | || || ||||| | Sbjct 461393 AAGGTGGCAGAGAGACCACAGCACATGATTATGCGTGTTGCGGTTGGCATACACGGTGAA 461334 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 ||||| || || | | ||| | ||||| | | ||| | || || Sbjct 461333 GACATTGAGAGTGCCATTGAGACTTACGACTACATGTCGAATAAGTACTTCACACACGCG 461274 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATG 93954 | || || ||||| || || || || ||| ||| ||| | || || || ||||| || Sbjct 461273 TCTCCCACTCTGTTTAATGCTGGCACGCCGTCGCCGCAGCTCTCCTCCTGCTTCCTCATC 461214 Query 93955 ACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATC 94014 | |||| ||| ||| || || | ||||| |||||| |||||| | || Sbjct 461213 GATATGAAGGAGGACAGCATAGAGGGCATCTACGACACGCTCAAGACCTGTGCTATGATT 461154 Query 94015 TCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTAC 94074 ||||| || || || ||||| | | || ||| | | ||||| | ||||| ||| Sbjct 461153 TCAAAGACTGCCGGTGGCATCGGTCTGAACGTACACCGCATTCGTGCGACTGGTTCGTAC 461094 Query 94075 ATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAAC 94134 || | |||||||| ||||| |||||||| || | |||||| | || |||| | | | Sbjct 461093 ATTGGTGGTACCAACGGCACATCCAACGGTCTAATTCCTATGTTGCGTGTCTACGATGCC 461034 Query 94135 GCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTC 94194 | || || || || || |||||||| | | | ||| ||||||| | || || Sbjct 461033 ACCGCTCGATATGTTGATCAGGGTGGCAACAAGCGCCCCGGTGCTTTCGCCATTTACCTT 460974 Query 94195 GAGCCCTGGCACGCGGACGT-----GCAGGCTTTCATCGACCTGCGAAAGAACCACGGCA 94249 ||||| ||||| || ||| | || ||||| ||| |||| ||||||||||| | Sbjct 460973 GAGCCATGGCATGCTGACATTTTTGGCTGGCTT-----GACTTGCGCAAGAACCACGGTA 460919 Query 94250 ACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGA 94309 | || | | | || | || |||||||| ||| | ||| ||| || || || |||| Sbjct 460918 AGGAAGAGAACCGTGCTCGTGATCTCTTCTATGCTTTGTGGACGCCTGATCTGTTCATGA 460859 Query 94310 AACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGT 94369 |||| || || | || |||| || || |||||||||||| || || || Sbjct 460858 AACGAGTTGAACAGAATGGTATGTGGACACTCTTCTGTCCCAATGAAGCACCTGGCCTCG 460799 Query 94370 CCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGG 94429 |||| || | || ||||| | | | || | ||||| | ||||| | Sbjct 460798 CCGATGTCTACGGCGAAGAGTTTGAGGCCCTATACGAGAAATACGAGAAGGAGGGCCGTG 460739 Query 94430 CCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGA 94489 | || || |||| |||||||||| || || | | | |||| |||| Sbjct 460738 GTCGTGAGACCATCCGTGCTCAGAAGCTGTGGTATGCCATTCTTCAGGCACAGACCGAGA 460679 Query 94490 CGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACC 94549 | || | |||| ||| | | ||||||| || |||| |||| ||||||| | ||| Sbjct 460678 CTGGCAATCCCTTCATGCTCTACAAGGACGCTTGCAACCGCAAGAGCAACCAGAAAAACC 460619 Query 94550 TCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACG 94609 | || ||| ||||| || || ||||||||||| | ||||| ||| | || |||| Sbjct 460618 TGGGAACCATCCGCAGCTCCAACCTTTGCACCGAGATCATTGAGTACACTGCCCCAGACG 460559 Query 94610 AGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGA---GATGCCT 94666 || | || ||||||||| ||| ||| | ||| | || || || ||| |||| | Sbjct 460558 AGGTCGCGGTGTGTAACTTGGCCTCTCTGGCTCTGCCAACCTTTGT-CGATGTCATGCGT 460500 Query 94667 ACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCT 94726 || ||| |||| | ||| | ||| || | | || | | | || Sbjct 460499 -GGCGAATACGACTTC-AAGAAGCTGCATGAG---GTCA----CCCGCCATG--TCGTTC 460451 Query 94727 TGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAA 94786 ||| |||||| | | ||||||| ||| |||||| || || ||||| ||| | Sbjct 460450 GCAACTTGAACAAGATCATCGACATTAACCACTACCCTGTACCAGAGGCACGTAACAGTA 460391 Query 94787 ACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGA 94846 || ||| || || || ||||| |||| || |||||| | || || || | | Sbjct 460390 ACATGAGACACCGTCCTATCGGTGTCGGTGTGCAGGGTCTTGCCGATGCTTTCCTCGCTC 460331 Query 94847 TGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGT-TTGAATTTGAACATATTCGAAAGC 94905 |||| ||||| | ||||||| || || || | |||| | | || || |||| | Sbjct 460330 TGCGGCTGCCATTCGACTCTCCAGAGGC-TCGTATGCTGAACATCCAAATCTTTGAAACC 460272 Query 94906 ATTTATTACGGGGCCATGAAACAATC-CGTCCACTTGGCCAGATCGGACGGCGGGCCACA 94964 || || ||| || ||| | || || ||| |||| | | | || | | Sbjct 460271 ATATACCACGCCGCTCTGACAGCTTCGTGTGAGCTT-GCCAAAGAGCAAGG-TCCCTATT 460214 Query 94965 CGAATCGTTCCG-CGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTG 95023 ||| ||| | || |||||| || ||||| ||||| |||| ||| | ||| | Sbjct 460213 CGA---GTTATGAGGGCTCGCCCGTGTCCCAGGGGATTTTGCAGTATGACATGTGGAACG 460157 Query 95024 TGAAGCCCTCGGGTCTGTACGACTGGGA-AGCTCTACGCGCTGATGTTATCAAACACGGT 95082 ||| || | | ||| | |||||||| ||| || ||||| | | || || ||| Sbjct 460156 TGACTCCAACTGATCTCTGGGACTGGGACAGC-CTCAAAGCTGAGATCAAAAAGCATGGT 460098 Query 95083 GTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGC 95142 || ||| | | || ||||| |||||||| || || || || | |||||||| || Sbjct 460097 GTCCGCAACTCCTTACTCGTGGCGCCCATGCCAACCGCTTCAACTTCTCAGATCCTGGGT 460038 Query 95143 AACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGG 95202 |||||||||| ||||| || | ||||| ||| | ||| | || ||||||||||| Sbjct 460037 AACAACGAGTGCTTCGAGCCATATACCTCAAACATCTACTCACGTCGCGTGCTCGCCGGC 459978 Query 95203 GAATTCCCCGTCATCAA 95219 || |||| ||| |||| Sbjct 459977 GAGTTCCAGGTCGTCAA 459961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494720930457320