Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23]
367 sequences; 31,780,469 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq15 134 1e-26
seq23 111 2e-19
seq9 84.2 2e-11
>seq15
Length=603150
Score = 134 bits (148), Expect = 1e-26
Identities = 344/520 (66%), Gaps = 19/520 (4%)
Strand=Plus/Plus
Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATC---GAGAGCGACACC 52382
|| || ||| ||||||| |||||| | ||||| | |||||| || ||| || ||
Sbjct 375839 GTTCCTTGCATTCGCAAGAAGGCTGACTGGGCGCTCCGCTGGATCTCTGACAGCAACTCC 375898
Query 52383 GCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGC 52442
|| | ||| ||| | | |||||||| || |||||| | || || || ||
Sbjct 375899 ACCT---TCGCCTCACGCCTCATCGCCTTCGCTGCCGTGGAGGGCATCTTCTTCTCTGGT 375955
Query 52443 AGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGC 52502
|||||| ||||||| | |||| | | ||| | ||||| ||| |||| ||| |
Sbjct 375956 GCCTTTGCTTCCATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCGGGCTTGACCTTCTCC 376015
Query 52503 AACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAG 52562
|||||| | || || |||||||| || ||||||| ||||| || ||||| || ||
Sbjct 376016 AACGAGCTCATTTCACGCGACGAGGGTATGCACACCGACTTCGCCTGCCTGCTCTTCA-- 376073
Query 52563 ACGCGCGTGACCGAAAAATTGGATTCG---GACACGATCCTGAGCATGTTCAAGGAGGCG 52619
|| ||| |||| | || || || | | ||| ||| |||||
Sbjct 376074 ----GCATGATTCAAAATAAGCCGTCTCCAGAGTCGGTGCGTGCCATCATCACCGAGGCT 376129
Query 52620 GTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAAC 52679
|| | ||||| || ||||| | || | || ||||| | ||||| || |||||
Sbjct 376130 GTCTCCATCGAGAAAGAGTTCCTCACCGAAGCCCTGCCTTGCCGCCTGCTCGGTATGAAT 376189
Query 52680 GCGCAGTCC--ATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCG 52737
|| || || |||||| ||||||| |||||||| || || || || | || ||||
Sbjct 376190 GC--AGACCTTATGTGCCAGTACATTGAGTTTGTAGCAGACCGCTTGCTCATGGCTCTCG 376247
Query 52738 GGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTG 52797
| | ||||| | |||||| || ||||| || || ||| | ||||| ||||| |
Sbjct 376248 GCAACACAAAGGTGTACAACGCGACGAACCCGTTCGACTTCATGGAGAACATCTCGCTGG 376307
Query 52798 AGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
|||||||| || || ||||||||||| || ||||| ||
Sbjct 376308 CAGGCAAGACAAATTTCTTCGAGAAGCGCGTTGGCGACTA 376347
>seq23
Length=461238
Score = 111 bits (122), Expect = 2e-19
Identities = 143/195 (73%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||||||||| |||||||| || |||||| || ||||| |||||||| |
Sbjct 205058 GACTCCTTTTGAATATTGTAGTCAGACAGAGTACGGCCATCTTCGAGCTGTTTACCAGCG 204999
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| || ||||| ||||| || || || || || ||||| ||| |||| || || |
Sbjct 204998 AAGATCAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCC-TGAATTTTGGTCTTGAC 204940
Query 138541 TGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
| || | ||| || | ||||| ||||| | ||| | || || ||||||||||| ||
Sbjct 204939 GTTATCGATGGTATCAGATGACTCGACCTCAAGCGTGATGGTCTTTCCAGTCAGAGTCTT 204880
Query 138600 TACAAAAATCTGCAT 138614
|| || ||||||||
Sbjct 204879 GACGAAGATCTGCAT 204865
Score = 100 bits (110), Expect = 3e-16
Identities = 125/168 (74%), Gaps = 4/168 (2%)
Strand=Plus/Minus
Query 138427 TTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATT 138486
|| ||||||||||||||| || ||| || ||| ||||| |||||||| | ||||
Sbjct 204650 TTCTGAATGTTGTAGTCGGACAGAGTGCGGCCGTCTTCGAGCTGTTTACCAGCGAAGATC 204591
Query 138487 AGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA--ATTGTT 138544
|| ||||| ||||| || || || || || ||||| ||| | || || ||| |||| |
Sbjct 204590 AGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTC-CTGAATCTTGGTCTTAACATTG-T 204533
Query 138545 CCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCA 138592
| | |||||||| |||||| ||||||| || | || || |||||||
Sbjct 204532 CGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGTCA 204485
>seq9
Length=905162
Score = 84.2 bits (92), Expect = 2e-11
Identities = 79/101 (78%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
||||||||||| |||||||||||| || ||| || ||||| ||||| || ||||
Sbjct 60870 GACTCCTTTTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCAAGTTGCTTGCCGGCG 60811
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521
|||| |||||||| ||||| || || ||||| || |||||
Sbjct 60810 AAGATAAGACGCTGCTGGTCGGGTGGAATACCCTCCTTGTC 60770
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496260123396240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |