Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq15 134 1e-26 seq23 111 2e-19 seq9 84.2 2e-11 >seq15 Length=603150 Score = 134 bits (148), Expect = 1e-26 Identities = 344/520 (66%), Gaps = 19/520 (4%) Strand=Plus/Plus Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATC---GAGAGCGACACC 52382 || || ||| ||||||| |||||| | ||||| | |||||| || ||| || || Sbjct 375839 GTTCCTTGCATTCGCAAGAAGGCTGACTGGGCGCTCCGCTGGATCTCTGACAGCAACTCC 375898 Query 52383 GCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGC 52442 || | ||| ||| | | |||||||| || |||||| | || || || || Sbjct 375899 ACCT---TCGCCTCACGCCTCATCGCCTTCGCTGCCGTGGAGGGCATCTTCTTCTCTGGT 375955 Query 52443 AGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGC 52502 |||||| ||||||| | |||| | | ||| | ||||| ||| |||| ||| | Sbjct 375956 GCCTTTGCTTCCATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCGGGCTTGACCTTCTCC 376015 Query 52503 AACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAG 52562 |||||| | || || |||||||| || ||||||| ||||| || ||||| || || Sbjct 376016 AACGAGCTCATTTCACGCGACGAGGGTATGCACACCGACTTCGCCTGCCTGCTCTTCA-- 376073 Query 52563 ACGCGCGTGACCGAAAAATTGGATTCG---GACACGATCCTGAGCATGTTCAAGGAGGCG 52619 || ||| |||| | || || || | | ||| ||| ||||| Sbjct 376074 ----GCATGATTCAAAATAAGCCGTCTCCAGAGTCGGTGCGTGCCATCATCACCGAGGCT 376129 Query 52620 GTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAAC 52679 || | ||||| || ||||| | || | || ||||| | ||||| || ||||| Sbjct 376130 GTCTCCATCGAGAAAGAGTTCCTCACCGAAGCCCTGCCTTGCCGCCTGCTCGGTATGAAT 376189 Query 52680 GCGCAGTCC--ATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCG 52737 || || || |||||| ||||||| |||||||| || || || || | || |||| Sbjct 376190 GC--AGACCTTATGTGCCAGTACATTGAGTTTGTAGCAGACCGCTTGCTCATGGCTCTCG 376247 Query 52738 GGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTG 52797 | | ||||| | |||||| || ||||| || || ||| | ||||| ||||| | Sbjct 376248 GCAACACAAAGGTGTACAACGCGACGAACCCGTTCGACTTCATGGAGAACATCTCGCTGG 376307 Query 52798 AGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||||| || || ||||||||||| || ||||| || Sbjct 376308 CAGGCAAGACAAATTTCTTCGAGAAGCGCGTTGGCGACTA 376347 >seq23 Length=461238 Score = 111 bits (122), Expect = 2e-19 Identities = 143/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||||||||| |||||||| || |||||| || ||||| |||||||| | Sbjct 205058 GACTCCTTTTGAATATTGTAGTCAGACAGAGTACGGCCATCTTCGAGCTGTTTACCAGCG 204999 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| ||||| || || || || || ||||| ||| |||| || || | Sbjct 204998 AAGATCAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCC-TGAATTTTGGTCTTGAC 204940 Query 138541 TGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||| || | ||||| ||||| | ||| | || || ||||||||||| || Sbjct 204939 GTTATCGATGGTATCAGATGACTCGACCTCAAGCGTGATGGTCTTTCCAGTCAGAGTCTT 204880 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 204879 GACGAAGATCTGCAT 204865 Score = 100 bits (110), Expect = 3e-16 Identities = 125/168 (74%), Gaps = 4/168 (2%) Strand=Plus/Minus Query 138427 TTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATT 138486 || ||||||||||||||| || ||| || ||| ||||| |||||||| | |||| Sbjct 204650 TTCTGAATGTTGTAGTCGGACAGAGTGCGGCCGTCTTCGAGCTGTTTACCAGCGAAGATC 204591 Query 138487 AGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA--ATTGTT 138544 || ||||| ||||| || || || || || ||||| ||| | || || ||| |||| | Sbjct 204590 AGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTC-CTGAATCTTGGTCTTAACATTG-T 204533 Query 138545 CCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCA 138592 | | |||||||| |||||| ||||||| || | || || ||||||| Sbjct 204532 CGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGTCA 204485 >seq9 Length=905162 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| |||||||||||| || ||| || ||||| ||||| || |||| Sbjct 60870 GACTCCTTTTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCAAGTTGCTTGCCGGCG 60811 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 |||| |||||||| ||||| || || ||||| || ||||| Sbjct 60810 AAGATAAGACGCTGCTGGTCGGGTGGAATACCCTCCTTGTC 60770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496260123396240