Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq23 122 8e-23 seq15 114 1e-20 seq10 114 1e-20 >seq23 Length=461238 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| |||||||||||||| || || || || ||| || |||||||| ||| Sbjct 205061 GTAGACTCCTTTTGAATATTGTAGTCAGACAGAGTACGGCCATCTTCGAGCTGTTTACCA 205002 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| |||||||| || || || ||||||||||||||| ||||| |||| Sbjct 205001 GCGAAGATCAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGAATTTTGGTCTTG 204942 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||| || | |||||| || | || | || || || |||||||| Sbjct 204941 ACGTTATCGATGGTATCAGATGACTCGACCTCAAGCGTGATGGTCTTTCCAGTCAGAGTC 204882 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 204881 TTGACGAAGATCTGCAT 204865 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 |||||| || | || ||||| |||||||| ||||| || || ||||||| ||| || Sbjct 205302 CACCAAGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCTGACAGCGTGCGACCATCCTC 205243 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 || || || |||||| ||||||| ||||||||||| || || || ||||||||||| Sbjct 205242 CAGTTGCTTACCAGCGAAGATCAAGCGCTGCTGATCTGGTGGAATACCCTCCTTGTCTTG 205183 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 || || ||| | | || | ||||| | || ||||| | ||| | ||| || Sbjct 205182 AATCTTGGTCTTCACATTGTCAATCGTGTCTGAGGATTCAACTTCTAGGGTGATCGTCTT 205123 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || || || || ||||| ||||| Sbjct 205122 TCCTGTGAGCGTCTTCACGAAAATTTGCAT 205093 Score = 93.3 bits (102), Expect = 4e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || ||||| ||||| ||| || ||||| || || |||||||| |||||| ||||| Sbjct 204650 TTCTGAATGTTGTAGTCGGACAGAGTGCGGCCGTCTTCGAGCTGTTTACCAGCGAAGATC 204591 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | |||||||| || || || ||||||||||||||| || || ||| | | ||| Sbjct 204590 AGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGAATCTTGGTCTTAACATTGTCG 204531 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCA 127091 | |||||| | |||||| |||| ||| | || ||||| |||| Sbjct 204530 ATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGTCA 204485 >seq15 Length=603150 Score = 114 bits (126), Expect = 1e-20 Identities = 289/438 (66%), Gaps = 11/438 (3%) Strand=Plus/Plus Query 47145 ATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTAC 47204 ||||| ||||| ||| |||||| |||||||||| || |||||| | || || | Sbjct 375917 ATCGCCTTCGCTGCCGTGGAGGGCATCTTCTTCTCTGGTGCCTTTGCTTCCATCTTCTGG 375976 Query 47205 ATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGAC 47264 | || | ||| | ||||| ||| | || || ||||||||| || || | ||| Sbjct 375977 CTTAAGAAGCGAGGTCTCATGCCGGGCTTGACCTTCTCCAACGAGCTCATTTCACGCGAC 376036 Query 47265 GAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAACACTAGAGTCGATCAAAAGTTG 47324 || || |||||||| |||| ||||| || || || || | |||||| | Sbjct 376037 GAGGGTATGCACACCGACTTCGCCTGCCTGCTCTTCAGCATGAT------TCAAAA-TAA 376089 Query 47325 GACGTGCCCACCGTCAGCGA----CATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTT 47380 | ||| ||| ||| | | ||| | |||| || ||| |||| |||| ||||| Sbjct 376090 GCCGTCTCCAGAGTCGGTGCGTGCCATCATCACCGAGGCTGTCTCCATCGAGAAAGAGTT 376149 Query 47381 TTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTA 47440 || |||| || ||||| | | || ||||| || || | ||| | |||| Sbjct 376150 CCTCACCGAAGCCCTGCCTTGCCGCCTGCTCGGTATGAATGCAGACCTTATGTGCCAGTA 376209 Query 47441 CATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACAC 47500 ||| || ||||| || |||||| ||||| | || | | ||| | ||| || | Sbjct 376210 CATTGAGTTTGTAGCAGACCGCTTGCTCATGGCTCTCGGCAACACAAAGGTGTACAACGC 376269 Query 47501 CGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGA 47560 ||| || ||||| || ||| | ||||| ||||| | |||||||| || || ||||| Sbjct 376270 GACGAACCCGTTCGACTTCATGGAGAACATCTCGCTGGCAGGCAAGACAAATTTCTTCGA 376329 Query 47561 GAAGCGCGTCGGCGAATA 47578 ||||||||| ||||| || Sbjct 376330 GAAGCGCGTTGGCGACTA 376347 >seq10 Length=848763 Score = 114 bits (126), Expect = 1e-20 Identities = 467/720 (65%), Gaps = 27/720 (4%) Strand=Plus/Plus Query 146065 TTGACCACCTGAAACTCGCCGGCGAGAACGCG-CCTCAGATACACGTTGCTGGTGAACGG 146123 ||||| ||||| |||||||||||||| ||||| | | || || | ||| ||| | || Sbjct 459961 TTGACGACCTGGAACTCGCCGGCGAGCACGCGACGTGAG-TAGATGTTTGAGGTATATGG 460019 Query 146124 CTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCAC 146183 |||||| ||||||||||||| || ||||| | || | |||||| |||||| |||||| Sbjct 460020 CTCGAAGCACTCGTTGTTACCCAGGATCTGAGAAGTTGAAGCGGTTGGCATGGGCGCCAC 460079 Query 146184 CAGCAAAGAGTTTCTCACGCCGTGTCTTTGAATCTTTTCCCGTAGTTTGGACCAATTCCA 146243 || || ||||| | || || || ||| |||| | || || ||| | ||| Sbjct 460080 GAGTAAGGAGTTGCGGACACCATGCTTTTTGATCTCAGCTTTGAGGCTGTCCCAGTCCCA 460139 Query 146244 CAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAATGCATAGTGCCGCGGAACAGGGG 146303 | |||| || ||| | || | |||| || |||| | | || || ||| ||| Sbjct 460140 GA---GATCAGTTGGAGTCACGTTCCACATGTCATACTGCAAAATCCCCTGGGACACGGG 460196 Query 146304 GCTATTCTCGTACGATTC--ATAAGGACCGTCGATC-TTGGCCAGTTCGCAGCTAGCTTC 146360 ||| || | || ||| ||||| | | || ||||| || || || |||| Sbjct 460197 CGAGCCCTCATA--ACTCGAATAGGGACC-TTGCTCTTTGGCAAGCTCACACGAAGCTGT 460253 Query 146361 CAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTAGTTGACGCTCCTGGCCTCCTCGCT 146420 |||||| | ||||||||| || ||| | ||| | | | ||||| Sbjct 460254 CAGAGCGGCGTGGTATATGGTTTCAAAGATTTGGATGTTCAGCATACGAGCCTCTGGAGA 460313 Query 146421 GTCGTAGGGGATATCGAGAAGCACAAAGGCGTCGGCGAGACCCTGTATCCCGACACCAAC 146480 |||| | || | ||| | || || ||||| |||||||| | |||||||| | Sbjct 460314 GTCGAATGGCAGCCGCAGAGCGAGGAAAGCATCGGCAAGACCCTGCACACCGACACCGAT 460373 Query 146481 GGGGCGGTGTTTCTTGTTACTGTT-CGCAGCGCCCGCAGTGGGATAGTGGTTGCTGTCGA 146539 || |||||| || |||||||||| || | | | | ||| |||||||| |||||| Sbjct 460374 AGGACGGTGTCTCATGTTACTGTTACGTGCCTCTGGTACAGGG-TAGTGGTTAATGTCGA 460432 Query 146540 TGATCTTGTTGAGATTACGCACGACAATTTTCGTCAAACGATTCAGCAGGACATAGTCAA 146599 |||||||||| | || || |||||| || | || |||| |||| Sbjct 460433 TGATCTTGTTCAAGTTGCGAACGACATGGCGGGTGACCTCATGCAGCTTCTTGAAGTCGT 460492 Query 146600 ATGTTTTAGTTTTAACGTTGACGCACTTGTTG--ACGGCGATAGAGGCCAAGTTACATAC 146657 || | | || | || || |||| | || | ||||||||||||||| || Sbjct 460493 ATTCGCCACGCATGACATCGA--CAAAGGTTGGCAGAGCCAGAGAGGCCAAGTTACACAC 460550 Query 146658 GGCAGTCTCGTCCTTGTCGCA--ATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTG 146715 || |||||| || ||| |||| | ||||||| ||| |||||| || | Sbjct 460551 CGCGACCTCGTC--TGGGGCAGTGTACTCAATGATCTCGGTGCAAAGGTTGGAGCTGCGG 460608 Query 146716 ATGATGCCCAAAtttttttGGTTACTAAACTT---GTTGCAGGGGTCCTTGTAGAGCATG 146772 ||| | |||| ||||| ||||| || ||| |||||| | |||||||||||||||| Sbjct 460609 ATGGTTCCCAGGTTTTTCTGGTTGCT---CTTGCGGTTGCAAGCGTCCTTGTAGAGCATG 460665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475498618640080