Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq23 87.8 2e-12 >seq23 Length=461238 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | ||| | ||||| || || |||||||| || || || || || Sbjct 205319 CCGCCACGGAGACGGAGCACCAAGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTC--TG 205262 Query 45174 ACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 || | | || ||| |||| ||| || || ||| | ||||| || ||||| || || | Sbjct 205261 ACAGCGTGCGACCATCCTCCAGTTGCTTACCAGCGAAGATCAAGCGCTGCTGATCTGGTG 205202 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291 |||| || || || |||||||| || || | || | ||||| || || || | Sbjct 205201 GAATACCCTCCTTGTCTTGAATCTTGGTCTTCACATTGTCAATCGTGTCTGAGGATTCAA 205142 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || || | ||| || || || || || || || ||||||||||| Sbjct 205141 CTTCTAGGGTGATCGTCTTTCCTGTGAGCGTCTTCACGAAAATTTGCAT 205093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452001126435320