Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq10 232 8e-56 seq15 114 2e-20 >seq10 Length=848763 Score = 232 bits (256), Expect = 8e-56 Identities = 1163/1823 (64%), Gaps = 51/1823 (3%) Strand=Plus/Plus Query 115549 GCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGC 115608 |||| || || || |||||||| || |||||||| || |||||||| || | |||| Sbjct 459646 GCCTGTGTACGCAGATAGTACATGCCAGTCTTGAGACCGAGCTTCCAGCCAGCGAAATGC 459705 Query 115609 ATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGA 115668 || |||| | |||| | ||||| | |||| || ||| | | |||||||| Sbjct 459706 ATGGAGGTGATCTTGCCCATCGTTGGTTCCTTCATGTGGATGTTGAGAGACTGGGATTGG 459765 Query 115669 TCGATGAA-GCGTCCCCGATCCGCCGCCATATCAATCACATC-CTTCATCTTGATTTCCC 115726 || ||||| ||| || ||||| || ||||| | || |||| | | ||| ||||||| Sbjct 459766 TCAATGAACGCG-CCACGATCGGCGGCCATCTGGATGACATGGCGTTGGCTT-ATTTCCC 459823 Query 115727 ACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGC 115786 | || || |||| | |||||||||||||| || | || || || || | Sbjct 459824 AGACCGTCTTGTACAATGCTTTAATATCATCTGGAATGTTTGGAATGCGCTGAATCGAAC 459883 Query 115787 CACCTGCCTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGAT 115846 |||| || | ||| | | |||||||| | ||||| | ||| || | ||||| Sbjct 459884 CACCCTCCGCAATGATGCGGTTCTTCATATTGTCAGACCACAAACCCATGTCAACGAGAT 459943 Query 115847 CCT----CCACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTC-TCAG 115901 | | | || | | |||||| || ||||| || ||||| ||| | | || Sbjct 459944 CTTTGAGCAACCAAGG----ATTGACGACCTGGAACTCGCCGGCGAGCACGCGACGTGAG 459999 Query 115902 ATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGA 115961 |||||||| | || |||||||| |||||||| |||||||||| ||| || | || || Sbjct 460000 -TAGATGTTTGAGGTATATGGCTCGAAGCACTCGTTGTTACCCAGGATCTGAGAAGTTGA 460058 Query 115962 GGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTC 116021 || || |||||||| |||| ||| | | |||||||| ||| | | || | Sbjct 460059 AGCGGTTGGCATGGGCGCCACGAGTAAGGAGTTGCGGACACCATGCTTTTTGATCTCAGC 460118 Query 116022 CTTGAGGGCGTCCCAGTCGTAGTTGAGCT-TTGTCTCCCCCTCCCACATATCAAACTGGA 116080 |||||| ||||||||| || || | ||| | | | |||||| ||| |||| | Sbjct 460119 TTTGAGGCTGTCCCAGTCCCAGA-GATCAGTTGGAGTCACGTTCCACATGTCATACTGCA 460177 Query 116081 GGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCA 116140 || || |||||| | ||||| |||||| | || ||| || || | | | || | Sbjct 460178 AAATCCCCTGGGACACGGGCGAGCCCTCATAACTCGAATAGGGACCTTGCTCTTTGGCAA 460237 Query 116141 ATTC----GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTC 116196 || | |||| | || || ||||| || || || ||||| || | ||| Sbjct 460238 GCTCACACGAAGCTGTC----AGAGCGGCGTGGTATATGGTTTCAAAGATTTGGATGTTC 460293 Query 116197 ATTGCCTTGG--CCTCGTCGGAATCAAACGCGAGACGGCACAAA-ATAAATACATCCGCG 116253 | || | | |||| || || || | || || || | | || |||| || Sbjct 460294 A--GCATACGAGCCTCTGGAGAGTCGAATGGCAGCCG-CAGAGCGAGGAAAGCATCGGCA 460350 Query 116254 AGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC 116313 ||||| || ||||||| || || || || |||||||| ||| || || || ||| Sbjct 460351 AGACCCTGCACACCGACACCGATAGGACGGTGTCTCATGTTACTGTTACGTGCC-TCTGG 460409 Query 116314 -ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGAT 116372 || || || || | ||||| | | | || | || |||| |||| Sbjct 460410 TACAGGGTAGTGGTTAATGTCGATGATCTTGTTCAAGTTGCGAACGACATGGCGGGTGAC 460469 Query 116373 TTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGC 116432 ||||| ||||| | | | || | || | | ||| |||| | | || || || Sbjct 460470 CTCATGCAGCTTCTTGAAGTCGTATTCGCCACGCATGACATCGACAAAGGTTGGCAGAGC 460529 Query 116433 GATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGT 116492 | || |||| |||||||| | | ||| || |||||||||| || || || || Sbjct 460530 CAGAGAGGCCAAGTTACACACCGCGACCTCGTCTGGGGCAGTGTACTCAATGATCTCGGT 460589 Query 116493 ACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGC 116552 || | || || || ||||| |||| ||| || || || ||| ||| || || Sbjct 460590 GCAAAGGTTGGAGCTGCGGATGGTTCCCAGGTTTTTCTGGTTGCTCTTGCGGTTGCAAGC 460649 Query 116553 ATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 116612 |||||||||||||| | || | || ||||| || || | || ||||| || | ||| Sbjct 460650 GTCCTTGTAGAGCATGAAGGGATTGCCAGTCTCGGTCTGTGCCTGAAGAATGGCATACCA 460709 Query 116613 TACATCGGCGGCTG-GCACAG-TGGCGTTGG---CTCGCCCCTCCTCCTCGTACTTTGTG 116667 | || ||| |||| | ||| | | || ||||||| |||||| || | Sbjct 460710 CA-----GCTTCTGAGCACGGATGGTCTCACGACCACGGCCCTCCTTCTCGTATTTCTCG 460764 Query 116668 TAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAG 116727 || ||||||||||||||||| || | || | ||| || ||||| | || |||||| Sbjct 460765 TATAGGGCCTCAAACTCTTCGCCGTAGACATCGGCGAGGCCAGGTGCTTCATTGGGACAG 460824 Query 116728 AAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGC 116787 ||||| | ||| |||| || ||||| || |||||||| || || || |||| | Sbjct 460825 AAGAGTGTCCACATACCATTCTGTTCAACTCGTTTCATGAACAGATCAGGCGTCCACAAA 460884 Query 116788 GCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAA 116847 || |||||||||| ||| || ||||| | || || || ||||| || | Sbjct 460885 GCATAGAAGAGATCACGAGCACGGTTCTCTTCCTTACCGTGGTTCTTGCGCAAGTCAAGC 460944 Query 116848 AAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---A 116904 || | | || || || ||||| || || ||||| | |||| | || ||| Sbjct 460945 CAGCCAAAAATGTCAGCATGCCATGGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTTG 461004 Query 116905 CGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATA 116964 ||| |||| | ||||| | || || || | | || || | ||| ||||| | | Sbjct 461005 TTGCCACCCTGATCAACATATCGAGCGGTGGCATCGTAGACACGCAACATAGGAATTAGA 461064 Query 116965 CCATCAGATTGGCCATTTGTCCCCCGAA--TACGAGACTTGTTGGCTCTGACATCGTGGA 117022 || | ||| ||| || || || | || ||||| || | | || | | ||| | Sbjct 461065 CCGTTGGATGTGCCGTTGGTACCACCAATGTACGA-ACCAG-TCGCACGAATGCGGTGTA 461122 Query 117023 TGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGT 117082 || || ||| || || || || |||||| || || || | |||| || ||| Sbjct 461123 CGTTCAGACCGATGCCACCGGCAGTCTTTGAAATCATAGCACAGGTCTTGAGCGTGTCGT 461182 Query 117083 AGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCC 117142 |||| || || || ||| |||| | |||||||||||||| || | || ||| Sbjct 461183 AGATGCCCTCTATGCTGTCCTCCTTCATATCGATGAGGAAGCAGGAGGAGAGCTGCGGCG 461242 Query 117143 TTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATC 117201 || || ||||| || || || || || | |||||| |||| ||| | | ||||| Sbjct 461243 ACGGCGTGCCAGCATTAAACAGAGTGGGAGACGCGTGTGTGAA-GTACTTATTCGACATG 461301 Query 117202 TTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGC 117261 | ||||| ||||| | | || ||||||||| ||||| || || | | || ||| Sbjct 461302 TAGTCGTAAGTCTCAATGGCACTCTCAATGTCTTCACCGTGTATGCCAACCGCAACACGC 461361 Query 117262 ATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTC 117321 |||| ||||| || ||| | || || | |||| || | | ||||| | || Sbjct 461362 ATAATCATGTGCTGTGGTCTCTCTGCCACCTTGCCATTGATTCGGAGAAGGTAGGACCTC 461421 Query 117322 TCCAAGGTCTTGAGACCAAAATA 117344 ||||| || |||| |||||||| Sbjct 461422 TCCAATGTTTTGAAGCCAAAATA 461444 >seq15 Length=603150 Score = 114 bits (126), Expect = 2e-20 Identities = 279/420 (66%), Gaps = 6/420 (1%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| || || |||||||||||||| |||||||| || | || ||| |||||||| Sbjct 376348 GTAGTCGCCAACGCGCTTCTCGAAGAAATTTGTCTTGCCTGCCAGCGAGATGTTCTCCAT 376289 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACG 127350 || || || |||||| | | ||| | | ||| || | |||| | || Sbjct 376288 GAAGTCGAACGGGTTCGTCGCGTTGTACACCTTTGTGTTGCCGAGAGCCATGAGCAAGCG 376229 Query 127351 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 127410 || | || |||||||||||| |||| || | |||||||||| ||| || Sbjct 376228 GTCTGCTACAAACTCAATGTACTGGCACATAAGGTCTGCATTCATACCGAGCAGGCGGCA 376169 Query 127411 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGTG 127470 || || || || || |||| | ||||| ||| ||||| || | |||||| | Sbjct 376168 AGGCAGGGCTTCGGTGAGGAACTCTTTCTCGATGGAGACAGCCTCGGTGATGATGGCACG 376109 Query 127471 AATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCA--CAG-CAAACTC 127527 | | || || |||| | | | ||||||| || ||| | || || Sbjct 376108 CACCGACTCTGGAGACGGCTTATTTTGAATCATGCTGAAGAG---CAGGCAGGCGAAGTC 376052 Query 127528 TTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 127587 ||| | ||||||||| || || ||||| || || |||||| || || |||||||| Sbjct 376051 GGTGTGCATACCCTCGTCGCGTGAAATGAGCTCGTTGGAGAAGGTCAAGCCCGGCATGAG 375992 Query 127588 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647 ||| |||||||| | |||||| || | | ||| | |||||||||||||| |||||||| Sbjct 375991 ACCTCGCTTCTTAAGCCAGAAGATGGAAGCAAAGGCACCAGAGAAGAAGATGCCCTCCAC 375932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613504385535720