Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq15 140 5e-28 seq10 104 4e-17 >seq15 Length=603150 Score = 140 bits (154), Expect = 5e-28 Identities = 333/499 (67%), Gaps = 11/499 (2%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| || || |||||||| ||| || || |||||||| |||| ||||| Sbjct 376333 CTTCTCGAAGAAATTTGTCTTGCCTGCCAGCGAGATGTTCTCCATGAAGTCGAACGGGTT 376274 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 | || ||| || ||| | ||||||||| ||||| | |||||| ||||| || Sbjct 376273 CGTCGCGTTGTACACCTTTGTGTTGCCGAGAGCCATGAGCAAGCGGTCTGCTACAAACTC 376214 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 ||||| ||||| | || || || || ||||| | || || ||||| | Sbjct 376213 AATGTACTGGCACATAAGGTCTGCATTCATACCGAGCAGGCGGCAAGGCAGGGCTTCGGT 376154 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACCC 159888 || ||||| ||||| || ||| || ||||| | || | |||| | || | Sbjct 376153 GAGGAACTCTTTCTCGATGGAGACAGCCTCGGTGATGAT------GGCACGCACCGACTC 376100 Query 159889 CGGCTTGCCCAAAATGTGG-TCCT--TAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCC 159945 || | | | || || | | || || ||||| || |||||| ||||| || Sbjct 376099 TGGAGACGGCTTATTTTGAATCATGCTGAAGAGCAGGCAGGCGAAGTCGGTGTGCATACC 376040 Query 159946 CTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTT 160005 |||||| || || |||| ||||||||| | | | | ||||||||||| || ||| || Sbjct 376039 CTCGTCGCGTGAAATGAGCTCGTTGGAGAAGGTCAAGCCCGGCATGAGACCTCGCTTCTT 375980 Query 160006 GAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGC 160065 ||||| || |||| ||||| ||||| || ||||| ||||||||||| || || || Sbjct 375979 AAGCCAGAAGATGGAAGCAAAGGCACCAGAGAAGAAGATGCCCTCCACGGCAGCGAAGGC 375920 Query 160066 CACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGC 160125 | ||| | | || | || |||| ||||| | |||| | ||||| ||||| Sbjct 375919 GATGAGGCGTGAGGCGAAGGTGGAGTTGCTGTCAGAGATCCAGCGGAGCGCCCAGTCAGC 375860 Query 160126 CTTCTTTGCG-ATGCACGG 160143 |||| ||||| ||||| || Sbjct 375859 CTTC-TTGCGAATGCAAGG 375842 >seq10 Length=848763 Score = 104 bits (114), Expect = 4e-17 Identities = 449/691 (65%), Gaps = 17/691 (2%) Strand=Plus/Plus Query 203838 TCTTG-TCCACCGTGAACTGAATGGCGTTCAC-GGCAGGCCTGCTT-CTCAGATAGTACA 203894 ||||| || || |||||||| |||| | || ||||| |||| | | ||||||||||| Sbjct 459610 TCTTGGTCGACGGTGAACTGGATGG-GAGCAGAGGCAG-CCTGTGTACGCAGATAGTACA 459667 Query 203895 TGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCA-CG 203953 |||| ||||| || || || ||| || | |||||||| | | |||| || || Sbjct 459668 TGCCAGTCTTGAGACCGAGCTTCCAGCCAGCGAAATGCATGGAGGTGATCTTGCCCATCG 459727 Query 203954 TTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATC 204012 || || || |||||| ||||| ||||||||| |||||| ||| || ||||| ||||| Sbjct 459728 TT-GGTTCCTTCATGTGGATGTTGAGAGACTGGGATTGGTCAATG-AACGCGCCACGATC 459785 Query 204013 TGCGGCCATATTGAT--AATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCT 204070 |||||||| | ||| |||| | || || ||||| ||||||||| ||| || Sbjct 459786 GGCGGCCATCTGGATGACATGGCGT--TGGCTTATTTCCCAGACCGTCTTGTACAATGCT 459843 Query 204071 CTGGTGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCT 204129 | | | | || | | || | | ||| ||||| || || || || | | Sbjct 459844 TTAATATCATCTGGAATGT-TTGGAATGCGCTGAATCGAACCACCCTCCGCAATGATGCG 459902 Query 204130 CATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTT 204189 || || | | || ||||| |||| | || || | || || || Sbjct 459903 GTTCTTCATATTGTCAGACCACAAACCCATGTCAACGAGATCTTTGAGCAACCAAGGATT 459962 Query 204190 GATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTC 204249 || || ||| || || |||| ||||| | || | | | | ||| ||| |||| || Sbjct 459963 GACGACCTGGAACTCGCCGGCGAGCACGCGACGTGAGTAGATGTTTGAGGTATATGGCTC 460022 Query 204250 GAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAG 204309 ||| ||||||||| || | ||||||| || || || |||||||| |||| ||| Sbjct 460023 GAAGCACTCGTTGTTACCCAGGATCTGAGAAGTTGAAGCGGTTGGCATGGGCGCCACGAG 460082 Query 204310 CAGGGAGTTGCGCACACCGT-ATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCA 204368 | ||||||||| ||||| | |||||| | | || || || | |||||| | Sbjct 460083 TAAGGAGTTGCGGACACCATGCTTTTTGATCTCAGC-TTTGAGGCTGTCCCAGTCCCAGA 460141 Query 204369 TCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGC 204428 || | || ||||| ||||||||| |||| || || || || || || || Sbjct 460142 GATCAGTTGGAGTCACGTTCCACATGTCATACTGCAAAATCCCCTGGGACACGGGCGAGC 460201 Query 204429 CCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGT 204488 ||| || ||| ||| || | ||||| || |||| ||||| || | || ||| Sbjct 460202 CCTCATAACTCGAATAGGGACCTTGCTCTTTGGCAAGCTCACACGAAGCTGTCAGAGCGG 460261 Query 204489 GATAGTACATGGTCTCAAAGATCTGAACGTT 204519 | ||| ||||| |||||||| || | ||| Sbjct 460262 CGTGGTATATGGTTTCAAAGATTTGGATGTT 460292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795151552225520