Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23]
367 sequences; 31,780,469 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq15 140 5e-28
seq10 104 4e-17
>seq15
Length=603150
Score = 140 bits (154), Expect = 5e-28
Identities = 333/499 (67%), Gaps = 11/499 (2%)
Strand=Plus/Minus
Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708
||||||||| || || |||||||| ||| || || |||||||| |||| |||||
Sbjct 376333 CTTCTCGAAGAAATTTGTCTTGCCTGCCAGCGAGATGTTCTCCATGAAGTCGAACGGGTT 376274
Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768
| || ||| || ||| | ||||||||| ||||| | |||||| ||||| ||
Sbjct 376273 CGTCGCGTTGTACACCTTTGTGTTGCCGAGAGCCATGAGCAAGCGGTCTGCTACAAACTC 376214
Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828
||||| ||||| | || || || || ||||| | || || ||||| |
Sbjct 376213 AATGTACTGGCACATAAGGTCTGCATTCATACCGAGCAGGCGGCAAGGCAGGGCTTCGGT 376154
Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACCC 159888
|| ||||| ||||| || ||| || ||||| | || | |||| | || |
Sbjct 376153 GAGGAACTCTTTCTCGATGGAGACAGCCTCGGTGATGAT------GGCACGCACCGACTC 376100
Query 159889 CGGCTTGCCCAAAATGTGG-TCCT--TAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCC 159945
|| | | | || || | | || || ||||| || |||||| ||||| ||
Sbjct 376099 TGGAGACGGCTTATTTTGAATCATGCTGAAGAGCAGGCAGGCGAAGTCGGTGTGCATACC 376040
Query 159946 CTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTT 160005
|||||| || || |||| ||||||||| | | | | ||||||||||| || ||| ||
Sbjct 376039 CTCGTCGCGTGAAATGAGCTCGTTGGAGAAGGTCAAGCCCGGCATGAGACCTCGCTTCTT 375980
Query 160006 GAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGC 160065
||||| || |||| ||||| ||||| || ||||| ||||||||||| || || ||
Sbjct 375979 AAGCCAGAAGATGGAAGCAAAGGCACCAGAGAAGAAGATGCCCTCCACGGCAGCGAAGGC 375920
Query 160066 CACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGC 160125
| ||| | | || | || |||| ||||| | |||| | ||||| |||||
Sbjct 375919 GATGAGGCGTGAGGCGAAGGTGGAGTTGCTGTCAGAGATCCAGCGGAGCGCCCAGTCAGC 375860
Query 160126 CTTCTTTGCG-ATGCACGG 160143
|||| ||||| ||||| ||
Sbjct 375859 CTTC-TTGCGAATGCAAGG 375842
>seq10
Length=848763
Score = 104 bits (114), Expect = 4e-17
Identities = 449/691 (65%), Gaps = 17/691 (2%)
Strand=Plus/Plus
Query 203838 TCTTG-TCCACCGTGAACTGAATGGCGTTCAC-GGCAGGCCTGCTT-CTCAGATAGTACA 203894
||||| || || |||||||| |||| | || ||||| |||| | | |||||||||||
Sbjct 459610 TCTTGGTCGACGGTGAACTGGATGG-GAGCAGAGGCAG-CCTGTGTACGCAGATAGTACA 459667
Query 203895 TGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCA-CG 203953
|||| ||||| || || || ||| || | |||||||| | | |||| || ||
Sbjct 459668 TGCCAGTCTTGAGACCGAGCTTCCAGCCAGCGAAATGCATGGAGGTGATCTTGCCCATCG 459727
Query 203954 TTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATC 204012
|| || || |||||| ||||| ||||||||| |||||| ||| || ||||| |||||
Sbjct 459728 TT-GGTTCCTTCATGTGGATGTTGAGAGACTGGGATTGGTCAATG-AACGCGCCACGATC 459785
Query 204013 TGCGGCCATATTGAT--AATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCT 204070
|||||||| | ||| |||| | || || ||||| ||||||||| ||| ||
Sbjct 459786 GGCGGCCATCTGGATGACATGGCGT--TGGCTTATTTCCCAGACCGTCTTGTACAATGCT 459843
Query 204071 CTGGTGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCT 204129
| | | | || | | || | | ||| ||||| || || || || | |
Sbjct 459844 TTAATATCATCTGGAATGT-TTGGAATGCGCTGAATCGAACCACCCTCCGCAATGATGCG 459902
Query 204130 CATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTT 204189
|| || | | || ||||| |||| | || || | || || ||
Sbjct 459903 GTTCTTCATATTGTCAGACCACAAACCCATGTCAACGAGATCTTTGAGCAACCAAGGATT 459962
Query 204190 GATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTC 204249
|| || ||| || || |||| ||||| | || | | | | ||| ||| |||| ||
Sbjct 459963 GACGACCTGGAACTCGCCGGCGAGCACGCGACGTGAGTAGATGTTTGAGGTATATGGCTC 460022
Query 204250 GAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAG 204309
||| ||||||||| || | ||||||| || || || |||||||| |||| |||
Sbjct 460023 GAAGCACTCGTTGTTACCCAGGATCTGAGAAGTTGAAGCGGTTGGCATGGGCGCCACGAG 460082
Query 204310 CAGGGAGTTGCGCACACCGT-ATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCA 204368
| ||||||||| ||||| | |||||| | | || || || | |||||| |
Sbjct 460083 TAAGGAGTTGCGGACACCATGCTTTTTGATCTCAGC-TTTGAGGCTGTCCCAGTCCCAGA 460141
Query 204369 TCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGC 204428
|| | || ||||| ||||||||| |||| || || || || || || ||
Sbjct 460142 GATCAGTTGGAGTCACGTTCCACATGTCATACTGCAAAATCCCCTGGGACACGGGCGAGC 460201
Query 204429 CCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGT 204488
||| || ||| ||| || | ||||| || |||| ||||| || | || |||
Sbjct 460202 CCTCATAACTCGAATAGGGACCTTGCTCTTTGGCAAGCTCACACGAAGCTGTCAGAGCGG 460261
Query 204489 GATAGTACATGGTCTCAAAGATCTGAACGTT 204519
| ||| ||||| |||||||| || | |||
Sbjct 460262 CGTGGTATATGGTTTCAAAGATTTGGATGTT 460292
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795151552225520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |