Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23]
367 sequences; 31,780,469 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq23 125 8e-24
seq2 113 5e-20
seq9 93.3 5e-14
>seq23
Length=461238
Score = 125 bits (138), Expect = 8e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||| | | ||| | ||| || |||| ||| ||||||||| ||||||||||| ||
Sbjct 205091 CCTCCGCGAAGACGTAGCACAAGGTGCAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 205032
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
||||| || | || |||||||| || || ||||| |||| |||||||||||| | ||
Sbjct 205031 AGAGTACGGCCATCTTCGAGCTGTTTACCAGCGAAGATCAGGCGCTGCTGGTCTGGTGGG 204972
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546
| || |||||||||| || || |||||| | | | || || || || ||
Sbjct 204971 ATGCCCTCCTTGTCCTGAATTTTGGTCTTGACGTTATCGATGGTATCAGATGACTCGACC 204912
Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| | ||||||||| || || ||||| || || || ||||| |||||
Sbjct 204911 TCAAGCGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAGATCTGCAT 204865
Score = 111 bits (122), Expect = 2e-19
Identities = 124/166 (75%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 46406 TTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 46465
|| || || ||||||||||| |||||||| |||| |||||||| || || ||||| |||
Sbjct 204650 TTCTGAATGTTGTAGTCGGACAGAGTGCGGCCGTCTTCGAGCTGTTTACCAGCGAAGATC 204591
Query 46466 AAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC 46525
| |||||||||||| | || | || |||||||||| ||||| |||| | | |
Sbjct 204590 AGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGAATCTTGGTCTTAACATTGTCG 204531
Query 46526 ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCA 46571
| |||||| ||| || || || | |||||||| ||||| ||||
Sbjct 204530 ATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGTCA 204485
Score = 105 bits (116), Expect = 8e-18
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||| | ||||| |||| || ||||||||| || |||||||| || || ||||| |
Sbjct 205308 ACGGAGCACCAAGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCTGACAGCGTGCGACC 205249
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| || || ||||| || ||||| |||||||||||||| || | || | | ||||||
Sbjct 205248 ATCCTCCAGTTGCTTACCAGCGAAGATCAAGCGCTGCTGATCTGGTGGAATACCCTCCTT 205189
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
||| ||||| |||| | | | | |||||| ||||| || || | |||||
Sbjct 205188 GTCTTGAATCTTGGTCTTCACATTGTCAATCGTGTCTGAGGATTCAACTTCTAGGGTGAT 205129
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || || || ||||| || || || ||||||||
Sbjct 205128 CGTCTTTCCTGTGAGCGTCTTCACGAAAATTTGCAT 205093
>seq2
Length=1312579
Score = 113 bits (124), Expect = 5e-20
Identities = 140/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
|||| ||||| ||||||||| ||| ||||| | || || ||||||||||| || || |
Sbjct 554488 CCTTCTGGATGTTGTAGTCGCTTAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGA 554547
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
|||||||||||||||| | || | | ||| |||||| |||||| |||| | |
Sbjct 554548 TCAAGCGCTGCTGGTCTGGTGGGATACCCTCTTTGTCCTGGATCTTGGTCTTCACATTGT 554607
Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583
| | ||| || ||| ||||| || | ||||| || |||||||| || || || || |
Sbjct 554608 CGATCGTATCCGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGA 554667
Query 46584 AGATTTGCATTT 46595
|| | || ||||
Sbjct 554668 AGCTATGAATTT 554679
>seq9
Length=905162
Score = 93.3 bits (102), Expect = 5e-14
Identities = 80/99 (81%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||||||||| ||||||||||| | |||||| | || || || ||||||||||||||
Sbjct 60868 CTCCTTTTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCAAGTTGCTTGCCGGCGAA 60809
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500
|| | ||||||||||||| || | | |||||||||
Sbjct 60808 GATAAGACGCTGCTGGTCGGGTGGAATACCCTCCTTGTC 60770
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565235806968840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |