Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23]
367 sequences; 31,780,469 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq15 159 3e-34
seq23 111 2e-19
seq2 93.3 4e-14
seq9 91.5 1e-13
>seq15
Length=603150
Score = 159 bits (176), Expect = 3e-34
Identities = 207/283 (73%), Gaps = 5/283 (2%)
Strand=Plus/Minus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
||| |||||||| || ||| ||| | || ||||| | |||||||||||| || || ||
Sbjct 375730 GTACGTGTCGATAAGCAGCGAGTACGTCTCGGAGTGAATGTTCTCCATGGCAATCTGGAA 375671
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGC-GAAACGCTCGACCAGAT 133285
|||||| ||||| || ||||| | ||| ||||| || || ||| || ||||| || |
Sbjct 375670 GCCGTAGAAGCAGCGTGCCTCTGGAATCTGTACTTC-TGCGCTGAAGCGTTCGACTAGGT 375612
Query 133286 TTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGC 133345
| ||||| |||||||| || |||||||| ||||| || | |||| |||||| ||
Sbjct 375611 TCTCGTTCACGATGCCATCCGACGCGGCGAAGAAGGCGAGGATGTGCGAGATGAAGAAGC 375552
Query 133346 GCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCT 133402
|||||| ||||| | || | |||||| | ||||||||||||| || | |||||
Sbjct 375551 GCTCGTCATCGTTAAGACGGTTGTTCCAGTCAGGAATGTCCTTGGACAGATCGATCTCCT 375492
Query 133403 CGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCA 133445
| | ||||| || || ||| || || |||||||| | |||
Sbjct 375491 CTGCAGTCCAGAAGGATGCCATTGCCTTCTTGTACATGCGCCA 375449
>seq23
Length=461238
Score = 111 bits (122), Expect = 2e-19
Identities = 164/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || |||||||| || || || |||||| | || || || || |
Sbjct 205093 ATGCAAATTTTCGTGAAGACGCTCACAGGAAAGACGATCACCCTAGAAGTTGAATCCTCA 205152
Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|||| | || || | | |||| || || | ||||| ||||| ||||| | || |
Sbjct 205153 GACACGATTGACAATG--TGAAGACCAAGATTCAAGACAAGGAGGGTATTCCACCAGATC 205210
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| ||||| | || | ||| || || || ||||| || | ||||| || |||||||
Sbjct 205211 AGCAGCGCTTGATCTTCGCTGGTAAGCAACTGGAGGATGGTCGCACGCTGTCAGACTACA 205270
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||| |||||||| |||| ||||| |||||||| ||| | | |||||
Sbjct 205271 ACATTCAAAAGGAGTCGACTCTGCACTTGGTGCTCCGTCTCCGTGGCGG 205319
Score = 89.7 bits (98), Expect = 5e-13
Identities = 118/164 (72%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAA 38327
|| ||||| ||||||||| |||| |||||| | |||||| | | | | ||||
Sbjct 204487 ACTGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCGACACCATCGACAATGTTAAGACC 204546
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| || | ||||| ||||| || || | ||||| ||||| || || | ||| || |||
Sbjct 204547 AAGATTCAGGACAAGGAGGGCATCCCACCAGACCAGCAGCGCCTGATCTTCGCTGGTAAA 204606
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431
||||| || |||| ||||| || |||||||||||| || ||
Sbjct 204607 CAGCTCGAAGACGGCCGCACTCTGTCCGACTACAACATTCAGAA 204650
>seq2
Length=1312579
Score = 93.3 bits (102), Expect = 4e-14
Identities = 138/193 (72%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 38242 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCA 38301
|||| || | ||||| || || ||||||||||| || |||||| | || || ||| |
Sbjct 554679 AAATTCATAGCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGT 554620
Query 38302 CCGACAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
| || | || | | | |||| || |||| ||||||||||| || || | |||
Sbjct 554619 CGGATA-CGATCGACAATGTGAAGACCAAGATCCAGGACAAAGAGGGTATCCCACCAGAC 554561
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|| ||||| | || | || ||||| ||||| || || | |||||||| | |||||||
Sbjct 554560 CAGCAGCGCTTGATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTAAGCGACTAC 554501
Query 38421 AACATCCAAAAGG 38433
|||||||| ||||
Sbjct 554500 AACATCCAGAAGG 554488
>seq9
Length=905162
Score = 91.5 bits (100), Expect = 1e-13
Identities = 86/110 (78%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396
||||| ||||| ||||| ||||||| ||||| || || | ||| ||||| || || ||
Sbjct 60770 GACAAGGAGGGTATTCCACCCGACCAGCAGCGTCTTATCTTCGCCGGCAAGCAACTTGAG 60829
Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446
|| | ||||| | ||||||||||||||||||||| ||||||||||
Sbjct 60830 GATGGCCGCACTTTGTCCGACTACAACATCCAAAAGGAGTCGACGCTGCA 60879
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500170505457280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |