Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq15 159 3e-34 seq23 111 2e-19 seq2 93.3 4e-14 seq9 91.5 1e-13 >seq15 Length=603150 Score = 159 bits (176), Expect = 3e-34 Identities = 207/283 (73%), Gaps = 5/283 (2%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| |||||||| || ||| ||| | || ||||| | |||||||||||| || || || Sbjct 375730 GTACGTGTCGATAAGCAGCGAGTACGTCTCGGAGTGAATGTTCTCCATGGCAATCTGGAA 375671 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGC-GAAACGCTCGACCAGAT 133285 |||||| ||||| || ||||| | ||| ||||| || || ||| || ||||| || | Sbjct 375670 GCCGTAGAAGCAGCGTGCCTCTGGAATCTGTACTTC-TGCGCTGAAGCGTTCGACTAGGT 375612 Query 133286 TTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGC 133345 | ||||| |||||||| || |||||||| ||||| || | |||| |||||| || Sbjct 375611 TCTCGTTCACGATGCCATCCGACGCGGCGAAGAAGGCGAGGATGTGCGAGATGAAGAAGC 375552 Query 133346 GCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCT 133402 |||||| ||||| | || | |||||| | ||||||||||||| || | ||||| Sbjct 375551 GCTCGTCATCGTTAAGACGGTTGTTCCAGTCAGGAATGTCCTTGGACAGATCGATCTCCT 375492 Query 133403 CGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCA 133445 | | ||||| || || ||| || || |||||||| | ||| Sbjct 375491 CTGCAGTCCAGAAGGATGCCATTGCCTTCTTGTACATGCGCCA 375449 >seq23 Length=461238 Score = 111 bits (122), Expect = 2e-19 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || |||||||| || || || |||||| | || || || || | Sbjct 205093 ATGCAAATTTTCGTGAAGACGCTCACAGGAAAGACGATCACCCTAGAAGTTGAATCCTCA 205152 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | || || | | |||| || || | ||||| ||||| ||||| | || | Sbjct 205153 GACACGATTGACAATG--TGAAGACCAAGATTCAAGACAAGGAGGGTATTCCACCAGATC 205210 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | || | ||| || || || ||||| || | ||||| || ||||||| Sbjct 205211 AGCAGCGCTTGATCTTCGCTGGTAAGCAACTGGAGGATGGTCGCACGCTGTCAGACTACA 205270 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||| |||||||| |||| ||||| |||||||| ||| | | ||||| Sbjct 205271 ACATTCAAAAGGAGTCGACTCTGCACTTGGTGCTCCGTCTCCGTGGCGG 205319 Score = 89.7 bits (98), Expect = 5e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAA 38327 || ||||| ||||||||| |||| |||||| | |||||| | | | | |||| Sbjct 204487 ACTGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCGACACCATCGACAATGTTAAGACC 204546 Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || || | ||||| ||||| || || | ||||| ||||| || || | ||| || ||| Sbjct 204547 AAGATTCAGGACAAGGAGGGCATCCCACCAGACCAGCAGCGCCTGATCTTCGCTGGTAAA 204606 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431 ||||| || |||| ||||| || |||||||||||| || || Sbjct 204607 CAGCTCGAAGACGGCCGCACTCTGTCCGACTACAACATTCAGAA 204650 >seq2 Length=1312579 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 38242 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCA 38301 |||| || | ||||| || || ||||||||||| || |||||| | || || ||| | Sbjct 554679 AAATTCATAGCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGT 554620 Query 38302 CCGACAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | || | | | |||| || |||| ||||||||||| || || | ||| Sbjct 554619 CGGATA-CGATCGACAATGTGAAGACCAAGATCCAGGACAAAGAGGGTATCCCACCAGAC 554561 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| | || | || ||||| ||||| || || | |||||||| | ||||||| Sbjct 554560 CAGCAGCGCTTGATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTAAGCGACTAC 554501 Query 38421 AACATCCAAAAGG 38433 |||||||| |||| Sbjct 554500 AACATCCAGAAGG 554488 >seq9 Length=905162 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| ||||| ||||||| ||||| || || | ||| ||||| || || || Sbjct 60770 GACAAGGAGGGTATTCCACCCGACCAGCAGCGTCTTATCTTCGCCGGCAAGCAACTTGAG 60829 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 || | ||||| | ||||||||||||||||||||| |||||||||| Sbjct 60830 GATGGCCGCACTTTGTCCGACTACAACATCCAAAAGGAGTCGACGCTGCA 60879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500170505457280