Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq23 396 3e-105 seq34 111 2e-19 seq10 111 2e-19 >seq23 Length=461238 Score = 396 bits (438), Expect = 3e-105 Identities = 1018/1539 (66%), Gaps = 26/1539 (2%) Strand=Plus/Plus Query 6635 CCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTT 6694 ||||| || || ||||| ||||| | || || || | |||| || |||| Sbjct 5849 CCCTTGTCGTTGGTAATGACGATCTTGTTCGACTTGCCGGTACCCTTCTCGACAGCTGAG 5908 Query 6695 ACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTC 6754 || || | ||||| || ||||| |||||||| | || | || || || ||| | Sbjct 5909 ACGTTGATGATACCGTTGGCATCGACATCGAATGTGACCTCGATCTGAGGAACACCACGA 5968 Query 6755 GGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTC 6814 || || | ||| |||||||| | || || | || || || |||| ||| | | | | Sbjct 5969 GGAGCAGGTGGGATACCCGTGAGCTCGAACTTGCCCAGCAAGTTGTTGTCCTTGGTCCTA 6028 Query 6815 TTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAG 6874 |||||||||||| || || | || ||| |||| || || || || ||| Sbjct 6029 GCACGTTCACCTTCGTACACCTGGATCAGCACACCAGGCTGGTTGTCGCTGAAAGTGGAG 6088 Query 6875 AAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATA 6934 ||| ||| ||||| | ||| || || || || | | ||| | || ||||||| | Sbjct 6089 AAGGTTTCGGACTTCTTGGTTGGGATGGTGGTGTTGCGCTTAATGAGTGGTGTCATAACA 6148 Query 6935 CCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG-TCT-- 6991 ||||| || |||| |||| || || || | ||||| ||| | |||| ||| Sbjct 6149 CCACCAGCGGTCTCGATACCAATGGAGAGGGGAGCAACGTC---GAGAAGCAGGATCTCG 6205 Query 6992 -TGAACAGATTCGTTCCCT---TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTA 7047 || | || | | | || || | ||||||||||| ||||| | || || || Sbjct 6206 CTGGTC-GACTTGGAGGATGTATCGCCGGACAAGATGGCGGCCTGGACAGCAGCACCATA 6264 Query 7048 TGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGA 7107 || || || ||||| ||||| || | || ||| | ||||| || || || |||| || Sbjct 6265 GGCAACGGCTTCATCAGGGTTGATTGACTTGTTCGGCTCTTTGCCATTGAAGAAATCGGA 6324 Query 7108 TAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCAC 7167 | | | || || || ||||| || || || || || || | ||||| || | || Sbjct 6325 GACAAGCTTCTGGATCTTGGGGATACGAGTGGAACCGCCAACGAGGACGATCTCGTGAAC 6384 Query 7168 TTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACG 7227 || || || ||||||| ||| || || || || || ||||| || Sbjct 6385 AGAGGACTTGTCAATCTTTGCGTCGCGCAGGACACGCTCAACGGGCTCCATGGTGGAGCG 6444 Query 7228 GAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAAC 7287 ||| | ||| ||||||||||| || || |||||||| || || || ||||| || | Sbjct 6445 GAAGAGGTCTTGGCACAGTTCCTCGAATCGAGCACGGGTGATTGAGGTGTAGAAGTCGAT 6504 Query 7288 GCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTT 7347 ||| || || | ||| || ||||| || | || || || | || | || ||||| Sbjct 6505 GCCCTCATACAGCGAGTCGATTTCGATCGAAGTCTGAGCTGAGCTGGACAGAGTACGCTT 6564 Query 7348 TGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTT 7407 || ||||| || || || || | ||| || || ||||| | |||| || | ||| || Sbjct 6565 GGCACGCTCGCAAGCAGTGCGAAGACGGCGCAGAGCACGAGCGTTAGAGGTGAGATCCTT 6624 Query 7408 CTTATGTTTACGTTTAAACTCTTCAGAGAAGTG--TCG-AAGGAGTCTCGAATCGAAATC 7464 ||| || || || || || || | |||||| || |||| | | ||| || || Sbjct 6625 CTTGTGCTTGCGCTTGAATTCGTTGACGAAGTGGTTCACAAGGCGGTT---ATCAAAGTC 6681 Query 7465 TTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAAT 7524 ||||||||||||||| || || || || || || ||||| || || ||||| | || || Sbjct 6682 TTCACCACCCAAGTGAGTGTCACCAGCAGTAGCCTTGACCTCGAAAATACCCTCCTCGAT 6741 Query 7525 GTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATC 7584 | | | | || ||||| || |||||||| || || ||||||||||| || ||| | || Sbjct 6742 GGTAAGGAGAGACACATCGAAGGTACCACCGCCGAGATCAAAAATGAGGACATTCTTCTC 6801 Query 7585 GTCGTCTTT---GTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAAT 7641 | || | | ||||| || |||||||| |||||||| || || ||||| || || || Sbjct 6802 GCCGGCCGTACCCTTCTTGTCCAGACCGTATGCGATAGCAGCGGCGGTTGGCTCGTTGAT 6861 Query 7642 AATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGA 7701 || || ||| ||| ||||| || || | || || || |||||||| || || || Sbjct 6862 GATTCGGAGAACGTTGAGGCCTGCGATGAGACCAGCGTCCTTTGTCGCTTGACGCTGTGA 6921 Query 7702 ATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGA 7761 ||||| |||||||| || || || | ||| |||| |||| | || |||||||| Sbjct 6922 GTCGTTGAAGTAGGCTGGAACAGTGATGACGGCGTTGTTGACGGTGCAGCCAAGATACGA 6981 Query 7762 TTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTG 7821 || || | || ||| ||||| || ||||| || || || || || | | || | Sbjct 6982 CTCGGCTGTCTCACGCATCTTGGTCAGGACCATAGACGAGATTTCCTCTGGAGTGAATTC 7041 Query 7822 TTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAAC 7881 || || || || || || || || | || ||||| || |||| | | ||| || Sbjct 7042 CTTGGTCTCGCCCTTGAACTCGACCTGGATGATGGGCTT-GCCGC--CCTTGTCGATGAC 7098 Query 7882 CTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGAT 7941 ||| | | | | || |||||| | || || | | | || | ||||| | ||||| Sbjct 7099 CTTGAATGGGAAGTGCTTGATATCGGCCTGAACTTCTGGATCGGCGAACTTGCGACCGAT 7158 Query 7942 AAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGC 8001 | |||||||| || || || || ||| |||||||||||| |||||||| || || Sbjct 7159 CAATCGCTTTGCGTCGAAGACGGTATTTGCGGGGTTCATGGCGACCTGGTTCTTGGCGGC 7218 Query 8002 GTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATT 8061 || ||||| | ||| || | || || || |||||| | || || || || || || Sbjct 7219 ATCACCGATCAAACGCTC---GGTGTCGGTGAAGGCGACGAAGGAGGGCGTTGTGCGGTT 7275 Query 8062 CCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATA 8121 || |||||||| ||||||||||| | | ||| | | | ||| ||| || || || || Sbjct 7276 GCCCTGGTCGTTGGCAATAATTTCGATTCTGTCATCTCGGAAGATGCCTACACATGAGTA 7335 Query 8122 CGTTGTTCCTAAATCAATACCGATTGCTTGAGTCATTTT 8160 || ||||| | ||| ||||| | ||| ||| |||||| Sbjct 7336 GGTAGTTCCAAGATCGATACCTACGGCTGGAGCCATTTT 7374 >seq34 Length=272164 Score = 111 bits (122), Expect = 2e-19 Identities = 190/276 (69%), Gaps = 0/276 (0%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||| || || ||||||| || || || || || || || ||| ||||| | || Sbjct 78031 ATCGAAGTCCTCGCCACCCAGATGAGTGTCACCAGCAGTTGCCAAGACCTCAAAAACGCC 77972 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | || ||| ||| | ||||||||||| ||||||||||| || ||| | | || || Sbjct 77971 TTGATCGATGGTTAGGATGGAAACATCAAAGGTACCACCACCAAGATCATAGACAAGAAC 77912 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 | || || | | | |||| || ||||| || |||| ||| || || || || || Sbjct 77911 CTGACGCTCATCCTTGTCGGTCTTGTCAAGACCATAGGCGAGAGCGGCGGCGGTGGGCTC 77852 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || | | ||| ||| ||| || || ||||| || | ||||| || || || || Sbjct 77851 GTTGACGACACGGAGAACGTTTAGACCCGCAATGGTGCCTGCATCCTTGGTGGCGGCACG 77792 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGAC 7731 || | |||||| ||||| |||||||| || ||||| Sbjct 77791 CTGGGCATCGTTGAAGTATGCCGGGACGGTAACGAC 77756 Score = 93.3 bits (102), Expect = 5e-14 Identities = 117/160 (73%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 ||||| |||||||| ||| ||||| ||||| | |||||| ||| |||||||| Sbjct 77467 CCGATCAGACGCTTGATATCGAAAACAGTGTTGTGCGGGTTCTGGGCAAACTGGTTCTTT 77408 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || ||||| |||| |||||||| | | | || || || || | || || || || Sbjct 77407 GCGGCGTCGCCGACCAGACGTTCCTCGT---CGGTGAAAGCTACCCAGGAAGGCGTTATT 77351 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGT 8096 || || || |||||||||||||| |||||||| ||| ||| Sbjct 77350 CGGTTACCCTGGTCGTTCGCAATGATTTCTACACGGCCGT 77311 >seq10 Length=848763 Score = 111 bits (122), Expect = 2e-19 Identities = 342/525 (65%), Gaps = 17/525 (3%) Strand=Plus/Plus Query 105463 TCGTATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGCC 105522 |||||||||||||| || | |||||||||| ||||| || || | || || ||| Sbjct 460753 TCGTATTTCTCGTATAGGGCCTCAAACTCTTCGCCGTAGACATCGGCGAGGCCAGGTGCT 460812 Query 105523 TGATCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATCT 105582 | || ||||| || | || ||| |||||| |||||| ||||||||||||| ||| Sbjct 460813 TCATTGGGACAGAAGAGTGTCCACATACCATTCTGTTCAACTCGTTTCATGAACAGATCA 460872 Query 105583 GGAATCCACATGGCTGAAAAGAGGTCTCGACACCTCGCCTCTTCATCACCTTGATTCAAA 105642 || |||||| || | ||||| || ||| | |||||| | ||| || ||| Sbjct 460873 GGCGTCCACAAAGCATAGAAGAGATCACGAGCACGGTTCTCTTCCTTACCGTGGTTCTTG 460932 Query 105643 CGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAG-A 105701 || | || || | | | ||| || || |||||||| || | || | || | || | Sbjct 460933 CGCAAGTCAAGCCAGCCAAAAATGTCAGCATGCCATGGCTCAAGGTAAATGGCGAAAGCA 460992 Query 105702 CC------CTTTACGACGCCCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCG 105755 || ||| | ||| | | |||| ||||||| ||||| | | || || || Sbjct 460993 CCGGGGCGCTT---GTTGCCAC-CCTGATCAACATATCGAGCGGTGGCATCGTAGACACG 461048 Query 105756 TAACATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGC 105815 ||||| ||||| | ||| | |||||| || || || |||| ||| | || | | || Sbjct 461049 CAACATAGGAATTAGACCGTTGGATGTGCCGTTGGTACCACCAATGTACGAACCAGTCGC 461108 Query 105816 ACGTACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTT---ACTGATACGCGCACA 105872 ||| | ||| |||| | || || || || || ||| | | ||| ||||| Sbjct 461109 ACGAATGCGGTGTACGTTCAGACCGATGCCACCGGCAGTCTTTGAAATCATA---GCACA 461165 Query 105873 CTCTTTTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACA 105932 || | || ||||| || || || || || || ||||| | | || ||||| || Sbjct 461166 GGTCTTGAGCGTGTCGTAGATGCCCTCTATGCTGTCCTCCTTCATATCGATGAGGAAGCA 461225 Query 105933 CGATGACATTTGTGGTCTGGGTGTACCAGCATTGAACAGAGTTGG 105977 || || | || || || || |||||||| |||||||| || Sbjct 461226 GGAGGAGAGCTGCGGCGACGGCGTGCCAGCATTAAACAGAGTGGG 461270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635129886328280