Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq10 255 7e-63 seq15 118 1e-21 seq29 86.0 8e-12 seq23 82.4 9e-11 >seq10 Length=848763 Score = 255 bits (282), Expect = 7e-63 Identities = 1132/1753 (65%), Gaps = 61/1753 (3%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 |||||| ||||| | ||||| || ||| | || || || || ||||| ||||| || Sbjct 461378 CCACAGCACATGATTATGCGTGTTGCGGTTGGCATACACGGTGAAGACATTGAGAGTGCC 461319 Query 111672 TTGGAGACATACGACAAGATGTCCCGTG-GTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||| |||||| | ||||| | ||| |||| ||||| | || || || || Sbjct 461318 ATTGAGACTTACGACTACATGTCGAATAAGTAC-TTCACACACGCGTCTCCCACTCTGTT 461260 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 || ||||| || || || || | ||| || ||||| || | | |||||||| Sbjct 461259 TAATGCTGGCACGCCGTCGCCGCAGCTCTCCTCCTGCTTCCTCATCGATATGAAGGAGGA 461200 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || | ||||| |||| ||| |||| ||||| || |||||| || || Sbjct 461199 CAGCATAGAGGGCATCTACGACACGCTCAAGACCTGTGCTATGATTTCAAAGACTGCCGG 461140 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAGGTACA 111908 ||| ||||| || || | || | | || | | || ||||| || | ||||| Sbjct 461139 TGGCATCGGTCTGAACGTACACCGCATTCGTGCGA-CTGGT-TCGTACATTGGTGGTACC 461082 Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968 || || ||| | ||| | ||||| ||| | || || | | ||||| || || ||| Sbjct 461081 AACGGCACATCCAACGGTCTAATTCCTATGTTGCGTGTCTACGATGCCACCGCTCGATAT 461022 Query 111969 GTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 112022 || | || | ||| ||| | | || || |||| | || |||||||||||| Sbjct 461021 GTTGATCAGGGTGGCAACAAGCGCCCC---GGTGCTTTCGCCATTTACCTTGAGCCATGG 460965 Query 112023 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGG 112082 || || || || | | | ||||| ||||| ||||| ||| | || || | | | Sbjct 460964 CATGCTGACATTTTTGGCTGGCTTGACTTGCGCAAGAACCACGGTAAGGAAGA-GAACCG 460906 Query 112083 TGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 112141 ||| || |||||||||| ||| | |||| || ||||| |||||||| ||||||| | Sbjct 460905 TGCTCGTGATCTCTTCTATGCTTTGTGGACGCCTGATCTGTTCATGAAACGAGTTGAACA 460846 Query 112142 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGG 112201 || ||| | ||| | ||||| ||||| | | ||||| || ||| |||||| | || Sbjct 460845 GAATGGTATGTGGACACTCTTCTGTCCCAATGAAGCACCTGGCCTCGCCGATGTCTACGG 460786 Query 112202 TGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGT 112261 || |||||||| ||||| ||| || |||||| | || | || | || ||| | Sbjct 460785 CGAAGAGTTTGAGGCCCTATACGAGAAATACGAGAAGGAGGGCCGTGGTCGTGAGACCAT 460726 Query 112262 GCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCAT 112320 | ||| | || | ||||| | || ||||| || | || ||||||||||| | || | Sbjct 460725 CCGTGCT-CAGAAGCTGTGGTATGCCATTCTTCAGGCACAGACCGAGACTGGCAATCCCT 460667 Query 112321 ATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCA 112380 ||||| ||||| ||||| || |||| ||||| || || || || |||| ||| Sbjct 460666 TCATGCTCTACAAGGACGCTTGCAACCGCAAGAGCAACCAGAAAAACCTGGGAACCATCC 460607 Query 112381 AGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGT 112440 || |||||||| || || || ||| | || | || | | ||| ||| || |||| Sbjct 460606 GCAGCTCCAACCTTTGCACCGAGATCATTGAGTACACTGCCCCAGACGAGGTCGCGGTGT 460547 Query 112441 GTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGAT-CCA---GAGACAAAGACATTT 112496 ||||| | || || | ||||| || | | ||| ||| || | | | || || Sbjct 460546 GTAACTTGGCCTCTCTGGCTCTGCCAACCTTTGTCGATGTCATGCGTGGCGAATAC---- 460491 Query 112497 GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATT 112556 || | | || || || || || || |||| ||| | |||| | || Sbjct 460490 GACTTCAAGAAGCTGCATGAGGTCACCCGCCATGTCGTTCGCAACTTGAACAAGATCATC 460431 Query 112557 GATAGAAATTTTTACCCCGT-TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAAT 112615 || | || ||||| || ||| || ||||| ||| |||||||||||||| || Sbjct 460430 GACATTAACCACTACCCTGTACCAGA-GGCACGTAACAGTAACATGAGACACCGTCCTAT 460372 Query 112616 TGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGCATTTGATT 112674 ||| ||||||| || ||||| || |||| ||| | || || || | |||| || | Sbjct 460371 CGGTGTCGGTGTGCAGGGTCTTGCCGATGCTTTCCTCGCTCTG-CGGCTGCCATTCGACT 460313 Query 112675 CCGACGAAG--CGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCT 112732 | || | || | | | || | || ||||| || || || ||||||||||| Sbjct 460312 CTCCAGAGGCTCGTATG--CTGAACATCCAAATCTTTGAAACCATATACCACGCCGCTCT 460255 Query 112733 TGAGGCGAGTTCG---GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTC 112789 | | |||| ||| | || | | | ||||| ||| | | |||||| || Sbjct 460254 ---GACAGCTTCGTGTGAGCTTGCCAAAGAGCAAGGTCCCTATTCGAGTTATGAGGGCTC 460198 Query 112790 TCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT--TCAC 112847 || | || || ||| | | || | ||| |||| |||| |||| |||| || || | Sbjct 460197 GCCCGTGTCCCAGGGGATTTTGCAGTATGACATGT-GGAACGTGACTCCAA-CTGATCTC 460140 Query 112848 TACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTT-- 112905 | ||||||||| ||||| | ||||| || | ||| | || ||| || || Sbjct 460139 TGGGACTGGGACAGCCTCAAAGCTGAGATCAAAAAGCATGGTGTCCGCAAC--TCCTTAC 460082 Query 112906 TGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTG 112965 | |||| || |||||||| || || || | || ||| ||||||| || || ||||| | Sbjct 460081 TCGTGGCGCCCATGCCAACCGCTTCAACTTCTCAGATCCTGGGTAACAACGAGTGCTTCG 460022 Query 112966 AACCCTACACGACGAACATCTATCTGA-GAAGAACCCTCGCGGGAGAGTTTGTGATTGTC 113024 | || || || | |||||||| || | | | ||||| || ||||| | | ||| Sbjct 460021 AGCCATATACCTCAAACATCTA-CTCACGTCGCGTGCTCGCCGGCGAGTTCCAGGTCGTC 459963 Query 113025 AA--CAAGCAT-CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 113081 || | | | ||| | || ||| || || ||| | ||||| | |||||||| Sbjct 459962 AATCCTTGGTTGCTC---AAAGATCTCGTTGACATGGGTTTGTGGTCTGACAATATGAAG 459906 Query 113082 GATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATT 113141 | | ||| | | ||||||||| ||||| ||| | ||||||||||| ||| Sbjct 459905 AACCGCATCATTGCGGAGGGTGGTTCGATTCAGCGCATTCCAAACATTCCAGATGATATT 459846 Query 113142 AAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAG-GATGTCATTGACATGGCCGC 113200 || |||||| || || |||||||| ||| | | ||||||| | |||||||| Sbjct 459845 AAAGCATTGTACAAGACGGTCTGGGAAAT-AAGCCAACGCCATGTCATCCAGATGGCCGC 459787 Query 113201 AGATCGTGGTCGC-TTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAA 113259 |||||||| ||| |||||||| ||| || | | || | |||| | |||| Sbjct 459786 CGATCGTGG-CGCGTTCATTGACCAATCCCAGTCTCTCAACATCCACATGAAGGAACCAA 459728 Query 113260 CGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGA 113319 ||||| |||| || | || ||||| | | |||||| |||||||| || || | Sbjct 459727 CGATGGGCAAGATCACCTCCATGCATTTCGCTGGCTGGAAGCTCGGTCTCAAGACTGGCA 459668 Query 113320 TGTATTACCTCCG 113332 |||| || || || Sbjct 459667 TGTACTATCTGCG 459655 >seq15 Length=603150 Score = 118 bits (130), Expect = 1e-21 Identities = 295/441 (67%), Gaps = 8/441 (2%) Strand=Plus/Plus Query 102183 CGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC-GCTAT 102241 || ||| |||| || || || ||||| ||||||||||||||| |||| ||| | || Sbjct 375911 CGCCTCATCGCCTTCGCTGCCGTGGAGGGCATCTTCTTCTCTGGTGCCTT-TGCTTCCAT 375969 Query 102242 TTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTC 102301 | ||||| |||||||||||||||||||| || | ||||||||||||||| || || Sbjct 375970 CTTCTGGCTTAAGAAGCGAGGTCTCATGCCGGGCTTGACCTTCTCCAACGAGCTCATTTC 376029 Query 102302 TCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTCA-AATTATTGCGTATTA 102360 || |||||||| | ||| || || || || |||| || ||| | | || Sbjct 376030 ACGCGACGAGGGTATGCACACCGACTTCGCCTGCCTGCTCTTCAGCATGATT-CAAAATA 376088 Query 102361 AACCAACGACTGAGACTATTCATTCTATTGTTAAGGAAGCCGTTGAGATTGAGAAGGGAT 102420 | || | | ||| | | | | | || | | || || || || ||||| | | Sbjct 376089 AGCCGTCTCCAGAGTCGGTGCGTGCCATCATCACCGAGGCTGTCTCCATCGAGAAAGAGT 376148 Query 102421 TCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAGATGTCCGAAT 102480 || | || ||||| || ||| || ||||||||||| | || |||| | | | Sbjct 376149 TCCTCACCGAAGCCCTGCCTTGCCGCCTGCTCGGTATGAATGCAGACCTTATGTGCCAGT 376208 Query 102481 ATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGCCTCCAA--TTTGGAA 102538 | ||||||| |||| | || | ||| | | | | || || | | || | | || Sbjct 376209 ACATTGAGTTTGTAGCAGACCGCTTGCTCATG--GCTCTCGGCAACACAAAGGTGTACAA 376266 Query 102539 CTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTT 102598 | | | ||| || || ||||||||||||||||| || | || |||||||| ||||| Sbjct 376267 CGCGACGAACCCGTTCGACTTCATGGAGAACATCTCGCTGGCAGGCAAGACAAATTTCTT 376326 Query 102599 CGAAAAGAGGGTTGGGGACTA 102619 ||| ||| | ||||| ||||| Sbjct 376327 CGAGAAGCGCGTTGGCGACTA 376347 >seq29 Length=351414 Score = 86.0 bits (94), Expect = 8e-12 Identities = 159/228 (70%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGGT-TGATTTTCGCGAGCGACTTCAAAGA 16122 |||||| || ||||||||||| | |||||| ||| || ||||| ||||| | || | Sbjct 320014 GGCATCGATTTCATCAATGAATATGATGCAAGGTGTGTTTTTC-CGAGCTGTCGCGAACA 320072 Query 16123 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 16182 ||| || |||||| | || || || || ||||| || ||||| | | | | || Sbjct 320073 AATCTCGAACACGCGATGGACCAACTCCGACGAACATTTCAACAAATTCAGAACCAG-AC 320131 Query 16183 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 16241 | | || ||| || ||| ||||| |||||| | ||| || ||||| || |||||| Sbjct 320132 ACGGAGAAGAATGGCACACCTGATTCTCCCGCAGTAGCTTTTGCCAGAAGTGTTTTACCC 320191 Query 16242 GTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA 16289 || ||||| || | | || |||||| || |||||||| || ||| Sbjct 320192 GTTCCTGGAGGTCCAGACAAGATGGCACCGCGGGGAATCTTTGCTCCA 320239 >seq23 Length=461238 Score = 82.4 bits (90), Expect = 9e-11 Identities = 210/317 (66%), Gaps = 2/317 (1%) Strand=Plus/Plus Query 16065 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 16124 ||||| | |||||||||||||| ||| ||| || | |||||| | | ||||| Sbjct 92174 GCATCCAATTCATCAATGAAGACAATGGCAGGTGCCTTAGCACGAGCGGCCTGGAAGAGC 92233 Query 16125 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 16184 || || ||||| || || || |||||||| | | || |||| | | ||| |||| Sbjct 92234 TCACGAACACGTTTCGCTCCAACACCAACGTAGACTTCATCAAACTCGGACCCGG-ACAT 92292 Query 16185 -TGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 16243 | || || || ||| || ||||| || | || |||||||| | |||||| || || Sbjct 92293 GTAGAAAAACGGCACACCAGCCTCACCAGCTACTGCACGGGCGAGCAAAGTCTTTCCTGT 92352 Query 16244 ACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCT 16303 ||| ||| ||| | || | | ||||| ||| | ||| | || | | || | Sbjct 92353 ACCAGGCGGACCAGTAAGCAAGACACCTTTTGGTAATTTGCCACCCAGAGAAGAAAATTT 92412 Query 16304 CTCAGGTTGCTTAAGAAAATCCACAATCTCTTCCAATTCATCTTTGGCGGCGTCAATCCC 16363 ||| ||| ||| | || || || | ||||| || ||| ||||| || |||| || Sbjct 92413 CTCTGGTGCCTTCAAGAATTCGACCAGCTCTTGCAGTTCTTCTTTTGCCTCGTCGCAGCC 92472 Query 16364 CTCAACATCGGTAAACC 16380 | ||||||| | |||| Sbjct 92473 ATGAACATCGCTGAACC 92489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620739552344240