Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq10 232 8e-56 >seq10 Length=848763 Score = 232 bits (256), Expect = 8e-56 Identities = 1110/1741 (64%), Gaps = 49/1741 (3%) Strand=Plus/Plus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467 || ||||| ||||| || || |||||||| |||||| | | |||||| || | | Sbjct 459655 CGCAGATAGTACATGCCAGTCTTGAGACCGAGCTTCCAGCCAGCGAAATGCATGGAGGTG 459714 Query 109468 AGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAAT 109527 | ||| | || || || ||| | ||| | ||||| || || || ||||| Sbjct 459715 ATCTTGCCCATCGTTGGTTCCTTCATGTGGATGTTGAGAGACTGGGATTGGTCAATGAAC 459774 Query 109528 CGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTG 109587 |||||||| || ||||| | ||||| | |||||| ||||||||||| |||||| Sbjct 459775 GCGCCACGATCGGCGGCCATCTGGATGACATGGCGTTGGCTTATTTCCCAGACCGTCTTG 459834 Query 109588 TACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTC 109647 ||||| || |||||||| ||||||| ||| ||||| || ||||| || Sbjct 459835 TACAATGCTTTAATATCATCTGGAATGTTTGGAATGCGCTGAATCGAACCACCCTCCGCA 459894 Query 109648 ACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGT----CAAC 109703 | ||| | | |||||| | | ||||| | ||| | | |||||| | |||| Sbjct 459895 ATGATGCGGTTCTTCATATTGTCAGACCACAAACCCATGTCAACGAGATCTTTGAGCAAC 459954 Query 109704 AAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGT 109763 | | | ||| |||| || | || || || || ||| || ||||||||| | Sbjct 459955 CA-AGGATTGACGACCTGGA---ACTCGCCGGCGAGCACGCGACGTGAGTAGATGTTTGA 460010 Query 109764 CGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCAT 109823 || || || ||||| ||||| ||||| || ||||| || | ||| ||||| || ||||| Sbjct 460011 GGTATATGGCTCGAAGCACTCGTTGTTACCCAGGATCTGAGAAGTTGAAGCGGTTGGCAT 460070 Query 109824 GGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCG-- 109881 ||| |||| ||| | ||| |||| ||| | | | || | | ||| || ||| | Sbjct 460071 GGGCGCCACGAGTAAGGAGTTGCGGACACCATGCTTTTTGATC---TCA-GCTTTGAGGC 460126 Query 109882 --TCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTA 109939 ||||| || | || || | | | |||| ||| |||| || || | | Sbjct 460127 TGTCCCAGTCCCAGAGATCAGT-----TGGAGTCACGTTCC-ACATGTCATACTGCAAAA 460180 Query 109940 CACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACT 109999 |||| | | || || |||| ||||| || | || | | | ||| | || Sbjct 460181 TCCCCTGGGACACGGGCGAGCCCTCATAACTCGAATAGGGACCTTGCTCTTTGGCAAGCT 460240 Query 110000 CGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGC 110059 | | ||||| || || || || || || || ||||| || || |||| | | Sbjct 460241 CACACGAAGCTGTCAGAGCGGCGTGGTATATGGTTTCAAAGATTTGGATGTTCAGCATAC 460300 Query 110060 GAGACTCTTCACAGTCGAAGGGAAGAC-CACAAAGAATAAACACATCCGCTAGACCCTGA 110118 ||| |||| | ||||||| || || | || | || ||| |||| || |||||||| Sbjct 460301 GAGCCTCTGGAGAGTCGAATGGCAGCCGCAGAGCGAGGAAAG-CATCGGCAAGACCCTGC 460359 Query 110119 ACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAA 110178 ||||||| ||| || || || || |||||||| | || || | ||| ||||| Sbjct 460360 ACACCGACACCGATAGGACGGTGTCTCATGTTACTGTTACGTGCCTCTGGTACAGGGTAG 460419 Query 110179 AAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGT 110238 ||| |||||||| | || | || ||| |||| ||||| || Sbjct 460420 TGGTTAATGTCGATGATCTTGTTCAAGTTGCGAACGACATGGCGGGTGACCTCATGCAGC 460479 Query 110239 TTGTCGTAATCGAACGTTTTCGTCTC-CTT---ATTGACATATTTGGGGAGAGCAATAGA 110294 || | | | ||| | |||| | | | | || |||| | | || ||||| | ||| Sbjct 460480 TTCTTGAAGTCGTA----TTCGCCACGCATGACATCGACAAAGGTTGGCAGAGCCAGAGA 460535 Query 110295 CGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAA 110354 || | || ||||| | ||||||| | | ||||| || | || || || || | Sbjct 460536 GGCCAAGTTACACACCGCGACCTCGTCTGGGGCAGTGTACTCAATGATCTCGGTGCAAAG 460595 Query 110355 GTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTT 110414 |||||| || ||| |||| ||| ||||| || ||| |||||| || ||||| Sbjct 460596 GTTGGAGCTGCGGATGGTTCCCAGGTTTTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTT 460655 Query 110415 ATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA-CAT 110473 ||||||||| | || | ||||| || ||||||| || |||||||| | ||| | | | Sbjct 460656 GTAGAGCATGAAGGGATTGCCAGTCTCGGTCTGTGCCTGAAGAATGGCATACCACAGCTT 460715 Query 110474 CGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCT 110533 | | | | ||| || | | | | || |||| |||||| || ||| | | ||| Sbjct 460716 CTGAG-CACGGATGGTCTCACGACCACGGCCCTCCTTCTCGTATTTCTCGTATAGGGCCT 460774 Query 110534 CAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACC 110593 |||| || | ||||| ||||| | || || || | | |||||||||||| | || Sbjct 460775 CAAACTCTTCGCCGTAGACATCGGCGAGGCCAGGTGCTTCATTGGGACAGAAGAGTGTCC 460834 Query 110594 AATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAA 110653 | | ||| || ||||| | ||||||||||| ||||| |||||| || |||| | Sbjct 460835 ACATACCATTCTGTTCAACTCGTTTCATGAACAGATCAGGCGTCCACAAAGCATAGAAGA 460894 Query 110654 GGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGA 110713 | ||||| ||| |||||| | ||| ||||| ||| | || | || | | | Sbjct 460895 GATCACGAGCACGGTTCTCTTCCTTACCGTGGTTCTTGCGCAAGTCAAGCCAGCCAAAAA 460954 Query 110714 TATCCGAGTGCCATGGTTCGAGATA------GACAGCGATGGATCCCTTACGACGACCCG 110767 | || | |||||||| || || || || ||| || | ||| | | || Sbjct 460955 TGTCAGCATGCCATGGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTT--GTTG-CCAC 461011 Query 110768 CCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGG 110827 |||| | |||||| || || ||||||| | |||| | | ||||||||| | || | || Sbjct 461012 CCTGATCAACATATCGAGCGGTGGCATCGTAGACACGCAACATAGGAATTAGACCGTTGG 461071 Query 110828 ATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATAC 110887 || || || ||||| | ||| || | | ||||||||| ||| | | || || Sbjct 461072 ATGTGCCGTTGGTACCACCAATGTACGAACCAGTCGCACGAATGCGGTGTACGTTCAGAC 461131 Query 110888 CAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGTGTACCATAAATACCA 110946 | || ||||| || ||| ||| ||||| ||| |||| || | || || || Sbjct 461132 CGATGCCACCGGCAGTCTTTGAAATCATAGCACAGGTCT-TGAGCGTGTCGTAGATGCCC 461190 Query 110947 TCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGA-GGCGT 111005 || || || |||| | | || || ||||| || || | ||| || ||| ||||| Sbjct 461191 TCTATGCTGTCCTCCTTCATATCGATGAGGAAGCAGGAGGAGAGCTGCGG-CGACGGCGT 461249 Query 111006 TCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCT-TGGGACATCTTGTTGT 111064 || ||||| || || || || | ||| || |||| || | | ||||| | || || Sbjct 461250 GCCAGCATTAAACAGAGTGGGAGACGCGTGTGTGAA-GTACTTATTCGACATGTAGTCGT 461308 Query 111065 ATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACA 111124 | || || | || | |||| |||||| || |||| ||||| ||||| | || Sbjct 461309 AAGTCTCAATGGCACTCTCAATGTCTTCACCGTGTATGCCAACCGCAACACGCATAATCA 461368 Query 111125 T 111125 | Sbjct 461369 T 461369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588973298072600