Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq10 286 4e-72 seq15 118 1e-21 >seq10 Length=848763 Score = 286 bits (316), Expect = 4e-72 Identities = 1168/1811 (64%), Gaps = 45/1811 (2%) Strand=Plus/Plus Query 105590 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAG 105649 || ||||||||||| || |||||||| || | ||||| | | |||||| || | | Sbjct 459655 CGCAGATAGTACATGCCAGTCTTGAGACCGAGCTTCCAGCCAGCGAAATGCATGGAGGTG 459714 Query 105650 AGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAA- 105708 | |||| ||||||||| | |||| | || | | || ||||||||||| Sbjct 459715 ATCTTGCCCATCGTTGGTTCCTTCATGTGGATGTTGAGAGACTGGGATTGGTCAATGAAC 459774 Query 105709 GCGACCACGTTGTGCCGCCATATCAATGACATC-CTTCATCTTGATTTCCCACACTGTGC 105767 ||| ||||| | || ||||| | ||||||| | | ||| |||||||| || || Sbjct 459775 GCG-CCACGATCGGCGGCCATCTGGATGACATGGCGTTGGCTT-ATTTCCCAGACCGTCT 459832 Query 105768 GGTAGAGATTCTTGA-TATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCC 105826 ||| | || ||| | |||||||||| || | || || ||||| ||||| ||| || Sbjct 459833 TGTACA-ATGCTTTAATATCATCTGGAATGTTTGGAATGCGCTGAATCGAACCACCCTCC 459891 Query 105827 TTGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACG 105886 | ||| | | |||||||| | ||||| | ||| || | |||||| |||| Sbjct 459892 GCAATGATGCGGTTCTTCATATTGTCAGACCACAAACCCATGTCAACGAGATCTTTGAGC 459951 Query 105887 AGATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTC-TCAGATAGATGTTCGT 105945 | ||||| | | ||||| || ||||| | | | || |||||||| | Sbjct 459952 AACCAAGGATTGACGACCTGGAACTCGCCGGCGAGCACGCGACGTGAG-TAGATGTTTGA 460010 Query 105946 CGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCAT 106005 || || || || ||||| || || ||||||| ||| || | || || || |||||||| Sbjct 460011 GGTATATGGCTCGAAGCACTCGTTGTTACCCAGGATCTGAGAAGTTGAAGCGGTTGGCAT 460070 Query 106006 TGGTGCCATCA--AAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACA 106063 || |||| | || || ||| || | ||| | | ||||| | ||||| Sbjct 460071 GGGCGCCACGAGTAAGGA--GTTGCGGACACCATGCTTTTTGATCTCAGCTTTGAGGCTG 460128 Query 106064 TCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTT 106121 |||||||| || || | |||| |||| |||| |||| ||| | || | | ||| | Sbjct 460129 TCCCAGTCCCAGA-GATCAGTTGGAGTCACGTTCC-ACATGTCATACTGCAAAATCCCCT 460186 Query 106122 GGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGC 106181 ||||| ||| || |||||| | || ||||| |||||| ||| || | ||||| Sbjct 460187 GGGACACGGGCGAGCCCTCATAACTCGAATAGGGACCTTGCTCTTTGGCAAGCTCACACG 460246 Query 106182 TCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTT 106241 || ||| | ||||| || |||||||||||||| | |||| | || | Sbjct 460247 AAGCTGTCAGAGCGGCGTGGTATATGGTTTCAAAGATTTGGATGTTCAGCATACGAGCCT 460306 Query 106242 CATCTGAATCAAATGCGTAGCGGCACAAA-ATAAATACATCCGCGAGACCTTGAACACCC 106300 | || || |||| | ||| ||| | | || |||| || ||||| || ||||| Sbjct 460307 CTGGAGAGTCGAATG-GCAGCCGCAGAGCGAGGAAAGCATCGGCAAGACCCTGCACACCG 460365 Query 106301 AAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA-ACGGGATAAAAATT 106359 | ||| ||||| | ||||| ||| ||| || || || ||| || || || || Sbjct 460366 ACACCGATAGGACGGTGTCTCATGTTACTGTTACGTGCC-TCTGGTACAGGGTAGTGGTT 460424 Query 106360 TCTGTCAATGA-CTCGGTTTAGATTTTTGGTAACAATCTTT---GTGATTTCATGAAGTT 106415 |||| |||| || | | || ||| ||| | | |||| ||||| || | Sbjct 460425 AATGTCGATGATCTTGTTCAAG----TTGCGAACGACATGGCGGGTGACCTCATGCAGCT 460480 Query 106416 TTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCA 106475 | | | || | || | | ||| |||| | |||| || || | || |||| Sbjct 460481 TCTTGAAGTCGTATTCGCCACGCATGACATCGACAAAGGTTGGCAGAGCCAGAGAGGCCA 460540 Query 106476 AATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGG 106535 | || || || || ||| || | |||||||| | || || || || | ||||| Sbjct 460541 AGTTACACACCGCGACCTCGTCTGGGGCAGTGTACTCAATGATCTCGGTGCAAAGGTTGG 460600 Query 106536 AACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGA 106595 | || || || |||| || || ||||| ||||| |||||| || |||||||||| Sbjct 460601 AGCTGCGGATGGTTCCCAGGTTTTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAGA 460660 Query 106596 GCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGG-- 106652 ||||| |||| | || ||||| ||||||| || ||||| || | ||||| | || | Sbjct 460661 GCATGAAGGGATTGCCAGTCTCGGTCTGTGCCTGAAGAATGGCATACCACAGCTTCTGAG 460720 Query 106653 --CGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTC 106710 ||| |||| | | | | || |||||| |||||| || ||| ||||| || Sbjct 460721 CACGGATGGTCTCACGAC-----CACGGCCCTCCTTCTCGTATTTCTCGTATAGGGCCTC 460775 Query 106711 AAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCA 106770 |||||| || || | |||| ||| || ||||| | | |||||||| || | ||| Sbjct 460776 AAACTCTTCGCCGTAGACATCGGCGAGGCCAGGTGCTTCATTGGGACAGAAGAGTGTCCA 460835 Query 106771 TTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAG 106830 |||| || ||||| || |||||||| || || || |||||| | | ||||| Sbjct 460836 CATACCATTCTGTTCAACTCGTTTCATGAACAGATCAGGCGTCCACAAAGCATAGAAGAG 460895 Query 106831 ATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGAT 106890 ||| | | || |||||| | ||| ||||| || || ||||| | | | || Sbjct 460896 ATCACGAGCACGGTTCTCTTCCTTACCGTGGTTCTTGCGCAAGTCAAGCCAGCCAAAAAT 460955 Query 106891 ATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTT 106946 || || |||||||||||||| || | |||| || || | | | | ||| | | Sbjct 460956 GTCAGCATGCCATGGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTTG-CCACCCT 461014 Query 106947 GATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATT 107006 ||| ||||| || || ||||| | | || || | ||| ||||| | ||| | ||| Sbjct 461015 GATCAACATATCGAGCGGTGGCATCGTAGACACGCAACATAGGAATTAGACCGTTGGATG 461074 Query 107007 GACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAA 107066 || || || || | ||| || | | || | | || | || || || | Sbjct 461075 TGCCGTTGGTACCACCAATGTACGAACCAGTCGCACGAATGCGGTGTACGTTCAGACCGA 461134 Query 107067 TACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGA 107126 | || || || |||||| || ||||| | | || || | ||||| || | | Sbjct 461135 TGCCACCGGCAGTCTTTGAAATCATAGCACAGGTCTTGAGCGTGTCGTAGATGCCCTCTA 461194 Query 107127 TTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAG 107186 | ||||||||| | |||| |||||||| ||| | |||||| || || |||| Sbjct 461195 TGCTGTCCTCCTTCATATCGATGAGGAAGCAGGAGGAGAGCTGCGGCGACGGCGTGCCAG 461254 Query 107187 CATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTC 107245 |||| || || || || | ||||| |||| ||| | | ||||| | |||||| ||| Sbjct 461255 CATTAAACAGAGTGGGAGACGCGTGTGTGAA-GTACTTATTCGACATGTAGTCGTAAGTC 461313 Query 107246 TCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTAT 107305 || | | || ||||||||||| ||||| ||||| | || |||||||||| ||||| Sbjct 461314 TCAATGGCACTCTCAATGTCTTCACCGTGTATGCCAACCGCAACACGCATAATCATGTGC 461373 Query 107306 TGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTG 107365 || ||| | || | |||||| || || |||| ||| | |||| | |||||| Sbjct 461374 TGTGGTCTCTCTGCCACCTTGCCATTGATTCGGAGAAGGTAGGACCTCTCCAATGTTTTG 461433 Query 107366 AGACCAAAGTA 107376 | ||||| || Sbjct 461434 AAGCCAAAATA 461444 >seq15 Length=603150 Score = 118 bits (130), Expect = 1e-21 Identities = 300/453 (66%), Gaps = 10/453 (2%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| ||||| |||||||| ||||| || ||||| || | || ||||| ||||| Sbjct 376347 TAGTCGCCAACGCGCTTCTCGAAGAAATTTGTCTTGCCTGCCAGCGAGATGTTCTCCATG 376288 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAA----TGGGTGGCACCCCAACTTGTTTGAGGAG 117101 ||||| || || ||| ||||||| | | || || || | | |||| | Sbjct 376287 AAGTCGAACGGGTTCGTCGCGTTGTACACCTTTGTGTTGC----CGAGAGCCATGAGCAA 376232 Query 117102 ACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATT 117161 || || | ||| |||||||||||| | |||| || | |||||||||| || Sbjct 376231 GCGGTCTGCTACAAACTCAATGTACTGGCACATAAGGTCTGCATTCATACCGAGCAGGCG 376172 Query 117162 ACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGC 117221 || || || || || || |||| ||||||| || || ||||| | | |||||| Sbjct 376171 GCAAGGCAGGGCTTCGGTGAGGAACTCTTTCTCGATGGAGACAGCCTCGGTGATGATGGC 376112 Query 117222 GTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTC 117281 | | | || | || || |||| | | | |||||||| ||| || || Sbjct 376111 ACGCACCGACTCTGGAGACGGCTTATTTTGAATCATGCTGAAGAGCAGGCAGGCGAAGTC 376052 Query 117282 CTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAG 117341 ||| | |||||| || || ||||| || || || |||||| | ||| |||||||| Sbjct 376051 GGTGTGCATACCCTCGTCGCGTGAAATGAGCTCGTTGGAGAAGGTCAAGCCCGGCATGAG 375992 Query 117342 ACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCA 117400 ||| |||||||| | ||| | || | ||| || | || ||||||||||| ||||||| Sbjct 375991 ACCTCGCTTCTTAAGCCAGAAGATGGAAGCA-AAGGCACCAGAGAAGAAGATGCCCTCCA 375933 Query 117401 CACACGCAAACGCAAAAAGGCGCTCGGCGAAGG 117433 | || || || | ||||| |||||||| Sbjct 375932 CGGCAGCGAAGGCGATGAGGCGTGAGGCGAAGG 375900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589978093463080