Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq3 107 2e-18 >seq3 Length=1310703 Score = 107 bits (118), Expect = 2e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 154871 TATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTAGACAGATATG 154930 ||||||||| || || ||| || ||| || ||||| ||||||| | | | || Sbjct 1029980 TATTATGATCACTTATCCAAGCACCTTTGGAGTGTTTGAGCCTAACATCAAGGAAGTTTG 1029921 Query 154931 TAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACA 154990 ||| | ||||| | | || || ||||| || | || |||||||| | ||||| || Sbjct 1029920 CAAGCTTGTTCACAATCACGGCGGCCAGGTGTACATGGACGGAGCAAACATGAATGCTCA 1029861 Query 154991 GGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAA 155050 | || ||| ||| ||||| ||| ||||| || || ||||| ||| | || || Sbjct 1029860 AATTGGTCTATGTTCACCCGGTGAGATTGGCGCAGACGTTTGCCATCTCAACCTGCACAA 1029801 Query 155051 AACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGT 155104 || ||||||||||||||||| ||||| || ||||| || ||||| || || || Sbjct 1029800 GACGTTCTGTATTCCACATGGTGGTGGTGGACCTGGTGTCGGTCCCATCGGAGT 1029747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579210142861280