Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq23 174 3e-38 seq9 95.1 3e-14 seq10 84.2 5e-11 >seq23 Length=461238 Score = 174 bits (192), Expect = 3e-38 Identities = 164/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| ||||| ||||| |||||||||||||| || | ||||| | ||||||||| Sbjct 205073 ACAAGGTGCAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAGAGTACGGCCATCTTCG 205014 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| ||||| |||||||| || || || |||||||| || ||||| || ||||| ||| Sbjct 205013 AGCTGTTTACCAGCGAAGATCAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGA 204954 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||||||||| || ||||| || || || || ||||| || | |||||| Sbjct 204953 ATTTTGGTCTTGACGTTATCGATGGTATCAGATGACTCGACCTCAAGCGTGATGGTCTTT 204894 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| ||| || ||||| | ||||| Sbjct 204893 CCAGTCAGAGTCTTGACGAAGATCTGCAT 204865 Score = 147 bits (162), Expect = 5e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||| ||||| |||||||| ||||| || | || || | ||||| || || || Sbjct 205296 GTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCTGACAGCGTGCGACCATCCTCCAGTTG 205237 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| |||||||| | || || || ||||| ||||| || || ||||||||||| || Sbjct 205236 CTTACCAGCGAAGATCAAGCGCTGCTGATCTGGTGGAATACCCTCCTTGTCTTGAATCTT 205177 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || || ||||| ||||| || ||| ||||| ||||| | |||||||||||| Sbjct 205176 GGTCTTCACATTGTCAATCGTGTCTGAGGATTCAACTTCTAGGGTGATCGTCTTTCCTGT 205117 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | |||||| Sbjct 205116 GAGCGTCTTCACGAAAATTTGCAT 205093 Score = 114 bits (126), Expect = 3e-20 Identities = 125/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || ||||| ||||| |||| ||||| | || ||||||||||| ||||| |||||||| Sbjct 204650 TTCTGAATGTTGTAGTCGGACAGAGTGCGGCCGTCTTCGAGCTGTTTACCAGCGAAGATC 204591 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 || || || |||||||| || ||||| || ||||| ||||| || ||| || || || Sbjct 204590 AGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGAATCTTGGTCTTAACATTGTCG 204531 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 |||||||| || || || || ||||| | ||||| || |||| Sbjct 204530 ATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGTCA 204485 >seq9 Length=905162 Score = 95.1 bits (104), Expect = 3e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || || ||||| ||||| || ||||| |||| | ||| | ||||| || Sbjct 60885 ACAAGGTGCAGCGTCGACTCCTTTTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCA 60826 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || ||||||||||| || || ||||| || ||||| || || |||||| || Sbjct 60825 AGTTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGTGGAATACCCTCCTTGTCTGGA 60766 >seq10 Length=848763 Score = 84.2 bits (92), Expect = 5e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 160589 TTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGG 160648 ||||| || | ||||| | ||||| |||||||| |||| || | ||||| ||| Sbjct 460892 TTCTATGCTTTGTGGACGCCTGATCTGTTCATGAAACGAGTTGAACAGAATGGTATGTGG 460833 Query 160649 AGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAG 160708 | || ||||||||||||||||| ||||| || | ||||| || || ||||| ||| Sbjct 460832 ACACTCTTCTGTCCCAATGAAGCACCTGGCCTCGCCGATGTCTACGGCGAAGAGTTTGAG 460773 Query 160709 ACTCTTTATGAAAGATACGAAAAAGAGGG 160737 | || || || | |||||| || ||||| Sbjct 460772 GCCCTATACGAGAAATACGAGAAGGAGGG 460744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109476383009489