Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23]
367 sequences; 31,780,469 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq23 174 3e-38
seq9 95.1 3e-14
seq10 84.2 5e-11
>seq23
Length=461238
Score = 174 bits (192), Expect = 3e-38
Identities = 164/209 (78%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|||||||| ||||| ||||| |||||||||||||| || | ||||| | |||||||||
Sbjct 205073 ACAAGGTGCAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAGAGTACGGCCATCTTCG 205014
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
||||| ||||| |||||||| || || || |||||||| || ||||| || ||||| |||
Sbjct 205013 AGCTGTTTACCAGCGAAGATCAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGA 204954
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
||||| ||||||||| || ||||| || || || || ||||| || | ||||||
Sbjct 204953 ATTTTGGTCTTGACGTTATCGATGGTATCAGATGACTCGACCTCAAGCGTGATGGTCTTT 204894
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| |||| ||| || ||||| | |||||
Sbjct 204893 CCAGTCAGAGTCTTGACGAAGATCTGCAT 204865
Score = 147 bits (162), Expect = 5e-30
Identities = 155/204 (76%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| ||||| ||||| |||||||| ||||| || | || || | ||||| || || ||
Sbjct 205296 GTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCTGACAGCGTGCGACCATCCTCCAGTTG 205237
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
|||||| |||||||| | || || || ||||| ||||| || || ||||||||||| ||
Sbjct 205236 CTTACCAGCGAAGATCAAGCGCTGCTGATCTGGTGGAATACCCTCCTTGTCTTGAATCTT 205177
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
||| || || ||||| ||||| || ||| ||||| ||||| | ||||||||||||
Sbjct 205176 GGTCTTCACATTGTCAATCGTGTCTGAGGATTCAACTTCTAGGGTGATCGTCTTTCCTGT 205117
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
| || || ||||| | ||||||
Sbjct 205116 GAGCGTCTTCACGAAAATTTGCAT 205093
Score = 114 bits (126), Expect = 3e-20
Identities = 125/166 (75%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012
|| ||||| ||||| |||| ||||| | || ||||||||||| ||||| ||||||||
Sbjct 204650 TTCTGAATGTTGTAGTCGGACAGAGTGCGGCCGTCTTCGAGCTGTTTACCAGCGAAGATC 204591
Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072
|| || || |||||||| || ||||| || ||||| ||||| || ||| || || ||
Sbjct 204590 AGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGAATCTTGGTCTTAACATTGTCG 204531
Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118
|||||||| || || || || ||||| | ||||| || ||||
Sbjct 204530 ATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGTCA 204485
>seq9
Length=905162
Score = 95.1 bits (104), Expect = 3e-14
Identities = 93/120 (78%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|||||||| || || ||||| ||||| || ||||| |||| | ||| | ||||| ||
Sbjct 60885 ACAAGGTGCAGCGTCGACTCCTTTTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCA 60826
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|| ||||| || ||||||||||| || || ||||| || ||||| || || |||||| ||
Sbjct 60825 AGTTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGTGGAATACCCTCCTTGTCTGGA 60766
>seq10
Length=848763
Score = 84.2 bits (92), Expect = 5e-11
Identities = 108/149 (72%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 160589 TTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGG 160648
||||| || | ||||| | ||||| |||||||| |||| || | ||||| |||
Sbjct 460892 TTCTATGCTTTGTGGACGCCTGATCTGTTCATGAAACGAGTTGAACAGAATGGTATGTGG 460833
Query 160649 AGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAG 160708
| || ||||||||||||||||| ||||| || | ||||| || || ||||| |||
Sbjct 460832 ACACTCTTCTGTCCCAATGAAGCACCTGGCCTCGCCGATGTCTACGGCGAAGAGTTTGAG 460773
Query 160709 ACTCTTTATGAAAGATACGAAAAAGAGGG 160737
| || || || | |||||| || |||||
Sbjct 460772 GCCCTATACGAGAAATACGAGAAGGAGGG 460744
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109476383009489
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |