Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq8 134 1e-26 >seq8 Length=997024 Score = 134 bits (148), Expect = 1e-26 Identities = 233/339 (69%), Gaps = 0/339 (0%) Strand=Plus/Minus Query 30045 GGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCAC 30104 ||||||||| |||| || ||||||||||| || | || |||||| ||| || | Sbjct 376790 GGGGTTCCACGCGCTCAGGATGATGCGCCGATCGTACGGCTTGTTCTTGAGCTTATCGAT 376731 Query 30105 GGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTC 30164 ||| ||||| ||||| ||| ||||| || || | | ||| |||||| Sbjct 376730 CACGTCCGCGAGCTGGTCCACACCCTGCCCCGTATAATCCGTATGCGCGTCGACGTACTC 376671 Query 30165 TGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTG 30224 |||||||| || | ||||||||| || || || || || ||||| |||||||| ||||| Sbjct 376670 CGCTCCGAAGTGACGCCACTGGAAACCATATACGGGACCGAGGTCGCCCTCTTCTCTGTG 376611 Query 30225 CTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC 30284 | ||| || | ||| | || |||| | || ||| ||||||||||||| | || Sbjct 376610 CCCGAGACCGTTGGCGTCGAGGAACTCTCGGCTCCCATTGCCGTCCCAGATCTTGATGCC 376551 Query 30285 CTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCAC 30344 || || |||||| ||| ||| || || ||| | |||||| |||||||| | | Sbjct 376550 CTGTTCTGAGAGCGGTTTCGAGGACGTCGAGCCTGCTATGAACCAGAGCAGCTCTGCAAT 376491 Query 30345 GACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30383 ||| || || || | |||||||||||| ||||| Sbjct 376490 GACTGCGCGGAGGAACACGCGCTTGGTCGTGAGAAGGGG 376452 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 29766 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTA 29825 ||||||| ||| || || | ||||||||| || |||| || ||||||||||| || Sbjct 377126 GGGAAAGTCTCTCGGTTCGCGCTCGAGCTGCACGTTGAGCGCCTCGACGTGATCCAGATA 377067 Query 29826 GACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29885 ||||| ||||| |||| |||||| ||| || || || || |||||| || Sbjct 377066 CACGTGTGCGTCGCCCATGGTGTGCGTCAACGTGCCGGGAATCAGGTCGCAGACGTGGGC 377007 Query 29886 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 29945 | ||||| ||| || | | ||| ||||||||| || || || || || |||||||| Sbjct 377006 GAGCATGTGCGTCAGCAACGCGTACGAGGCGATGTTGAACGGCACGCCTAGGCCCATGTC 376947 Query 29946 CCCCGACCTCTGGTAGAG 29963 | ||||| ||| || || Sbjct 376946 GCACGACCGCTGATACAG 376929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408615772330091