Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq10 214 3e-50 seq15 165 2e-35 >seq10 Length=848763 Score = 214 bits (236), Expect = 3e-50 Identities = 488/726 (67%), Gaps = 15/726 (2%) Strand=Plus/Plus Query 212906 AGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTA 212965 ||| ||||| | |||||| || || | |||||| | | ||| | |||||| || || Sbjct 459957 AGGATTGACGACCTGGAACTCGCCGGCGAGCACGCGACGTGAGTAGATGTTTGAGGTATA 460016 Query 212966 GGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGC 213025 ||||||| || ||||||||| ||||| ||||| | ||| || || |||||||| || Sbjct 460017 TGGCTCGAAGCACTCGTTGTTACCCAGGATCTGAGAAGTTGAAGCGGTTGGCATGGGCGC 460076 Query 213026 CACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAG-GCGCCGAAGCTCTGCCCAGT 213084 ||| || | ||| | || || |||| ||| || || ||| | |||||| Sbjct 460077 CACGAGTAAGGAGTTGCGGACACCATGCTTTTTGATCTCAGCTTTGAGGCTGT-CCCAGT 460135 Query 213085 CCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTT 213144 |||| ||| || ||| ||||||||||||||| ||||||| || || | Sbjct 460136 CCCAG-----AGATCAGTTGGAGTC----ACGTTCCACATGTCATACTGCAAAATCCCCT 460186 Query 213145 TGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGG 213204 | |||||| ||||| ||| || ||||| || ||||| ||||| ||||| || | Sbjct 460187 GGGACACGGGCGAGCCCTCATAACTCGAATAGGGACCTTGCTCTTTGGCAAGCTCACACG 460246 Query 213205 ACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCT 213264 | || ||| || |||| ||| ||||||||||| || | |||| ||| | |||| Sbjct 460247 AAGCTGTCAGAGCGGCGTGGTATATGGTTTCAAAGATTTGGATGTTCAGCATACGAGCCT 460306 Query 213265 CTGGGGACGTGAAGGGCATCATCA-TGCGTTGGAACACATCAGCCAGCCCCTGGACCCCG 213323 |||| || ||| |||| | || ||| |||| |||| || || ||||| || ||| Sbjct 460307 CTGGAGAGTCGAATGGCAGCCGCAGAGCG-AGGAAAGCATCGGCAAGACCCTGCACACCG 460365 Query 213324 ATGCCGATGGGTCTGTGTCTCAGGTTAGACTT-GGAGCACTCCTCCAAGGGGTAAAAGTT 213382 | ||||| || | |||||||| |||| || | || ||| | ||||| ||| Sbjct 460366 ACACCGATAGGACGGTGTCTCATGTTACTGTTACGTGC-CTCTGGTACAGGGTAGTGGTT 460424 Query 213383 GCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTC 213442 ||||||||||||||| | |||||| | | |||||| | ||| | || Sbjct 460425 AATGTCGATGATCTTGTTCAAGTTGCGAACGACATGGCGGGTGACCTCATGCAGCTTCTT 460484 Query 213443 GTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTT 213502 | | | | || | | | | | ||||| ||||| || | ||||| ||| Sbjct 460485 GAAGTCGTATTCGCCACGCATGACATCGACAAAGGTTGGCAGAGCCAGAGAGGCCAAGTT 460544 Query 213503 GCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCA 213562 || || || ||||| | | | | |||||||| |||||||||||||| |||||| || Sbjct 460545 ACACACCGCGACCTCGTCTGGGGCAGTGTACTCAATGATCTCGGTGCAAAGGTTGGAGCT 460604 Query 213563 TCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCAT 213622 |||||||| |||||||| | ||||| ||| |||| || |||||||||||||| Sbjct 460605 GCGGATGGTTCCCAGGTTTTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCAT 460664 Query 213623 GTAGGG 213628 | |||| Sbjct 460665 GAAGGG 460670 >seq15 Length=603150 Score = 165 bits (182), Expect = 2e-35 Identities = 347/509 (68%), Gaps = 19/509 (4%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| ||||| |||||||| || ||| |||||||||||| Sbjct 376351 CTGGTAGTCGCCAACGCGCTTCTCGAAGAAATTTGTCTTGCCTGCCAGCGAGATGTTCTC 376292 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCA---G 47955 ||||||| ||| ||||| | | ||| |||||| ||| ||| | | ||| | Sbjct 376291 CATGAAGTCGAACGGGTTCGTCGCGTTGTACACCTTTGTGTTGCCGA---GAGCCATGAG 376235 Query 47956 CAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAG 48015 || | | || || || |||| ||||| | |||| ||| ||||| || | || Sbjct 376234 CAAGCGGTCTGCTACAAACTCAATGTACTGGCACATAAGGTCTGCATTCATACCGAGCAG 376175 Query 48016 G-GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAA 48074 | | || || || || | ||||| ||||| ||||| || || || || | | Sbjct 376174 GCGGCAAGG-CAGGGCTTCGGTGAGGAACTCTTTCTCGATGGAGACAGCCTCGGTGATGA 376116 Query 48075 TCTGCTTAACGCGG-GACTCTG---AGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATG 48130 | || |||| ||||||| | || || || | | | || |||||| | Sbjct 376115 TG-GC---ACGCACCGACTCTGGAGACGGCTTATTTTGAAT---CATGCTGAAGAGCAGG 376063 Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 ||||| ||||| |||||| || ||||| || |||||| ||||||||||| | Sbjct 376062 CAGGCGAAGTCGGTGTGCATACCCTCGTCGCGTGAAATGAGCTCGTTGGAGAAGGTCAAG 376003 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 || ||||||| || | || || |||||||| || | || || | |||||||||||| Sbjct 376002 CCCGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGAAGCAAAGGCACCAGAGAAGAAG 375943 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310 ||||||||||| || ||||| ||| |||| | |||| | | ||| |||| ||| Sbjct 375942 ATGCCCTCCACGGCAGCGAAGGCGATGAGGCGTGAGGCGAAGGTGGAGTTGCTGTCAGAG 375883 Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTT 48339 |||||| ||||||||||| |||||||| Sbjct 375882 ATCCAGCGGAGCGCCCAGTCAGCCTTCTT 375854 Score = 104 bits (114), Expect = 4e-17 Identities = 180/261 (69%), Gaps = 3/261 (1%) Strand=Plus/Minus Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 |||| |||| ||||| | ||||| || || |||||||| ||||||||| | ||||| Sbjct 375709 GTACGTCTCGGAGTGAATGTTCTCCATGGCAATCTGGAAGCCGTAGAAGCAGCGTGCCTC 375650 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGA 48543 | ||| ||||||| | ||| | || | || ||||| || || || ||||| || Sbjct 375649 TGGAATCTGTACTTCTGCGCTGAAGCGTTCGACTAGGTTCTCGTTCACGATGCCATCCGA 375590 Query 48544 AGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT 48603 || || |||||||| |||| || | ||| |||||||| | | | ||| || Sbjct 375589 CGCGGCGAAGAAGGCGAGGATGTGCGAGATGAAGAAGCGCTCGTCATCGTTAAGACGGTT 375530 Query 48604 ---CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAG 48660 |||| | | | ||| ||| ||| || | || || ||||||||||||| || | Sbjct 375529 GTTCCAGTCAGGAATGTCCTTGGACAGATCGATCTCCTCTGCAGTCCAGAAGGATGCCAT 375470 Query 48661 TGCTTTTTTGTACATGCCCCA 48681 ||| || |||||||||| ||| Sbjct 375469 TGCCTTCTTGTACATGCGCCA 375449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931528526593280