Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq10 215 1e-50 seq15 141 2e-28 >seq10 Length=848763 Score = 215 bits (238), Expect = 1e-50 Identities = 829/1275 (65%), Gaps = 59/1275 (5%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGA 221476 ||||| || |||||||| ||||| |||||||| |||| || | ||||| ||| Sbjct 460252 GTCAGAGCGGCGTGGTATATGGTTTCAAAGATTTGGATGTTCAGCATACGAGCCTCTGGA 460311 Query 221477 GAAGTGAAGGGCATACGCAGCATCT--GAAAGACGTCGGCCAGTCCCTGTACTCCGATAC 221534 || ||| |||| ||||| | | ||||| | ||||| || ||||| || |||| || Sbjct 460312 GAGTCGAATGGCAGCCGCAG-AGCGAGGAAAG-CATCGGCAAGACCCTGCACACCGACAC 460369 Query 221535 CGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGAC 221592 |||| || | ||||||| |||| | || || ||||| || || || ||| | Sbjct 460370 CGATAGGACGGTGTCTCATGTTACTGTTACGT--GCCTCTGGTACAGGGTAGTGGTTAAT 460427 Query 221593 GTCGATCAGATTGTTGAGGTTCAGAGTGA--TGACTTTAACCACCTCGGTCAGCTTCTGG 221650 |||||| | ||||| | ||| || || || | ||||| |||||||| Sbjct 460428 GTCGATGATCTTGTTCAAGTTGCGAACGACATGGCGGGTG--ACCTCATGCAGCTTCT-- 460483 Query 221651 TGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACG 221710 |||| | | ||||| | | | | || ||||| | || || | Sbjct 460484 ----TGAAGTCGTATTCGCCAC------GCATGACATCGACAAAGGTTGGCAGAGCCAGA 460533 Query 221711 CTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAG 221770 ||||| ||||||||| || |||||||| | || |||| |||||||| || || Sbjct 460534 GAGGCCAAGTTACACACCGCGACCTCGTCTGGGGCAGTGTACTCAATGATCTCGGTGCAA 460593 Query 221771 AGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCC 221830 |||||| || |||||| ||||||| || || || |||||| ||| ||||||| Sbjct 460594 AGGTTGGAGCTGCGGATGGTTCCCAGGTTTTTCTGGTTGCTCTTGCGGTTGCAAGCGTCC 460653 Query 221831 TTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGT 221890 ||||||||||| |||||| ||||||||| ||| ||| ||||| | ||| || Sbjct 460654 TTGTAGAGCATGAAGGGATTGCCAGTCTCGGTCTGTGCCTGAAGAATGGCATACCACAGC 460713 Query 221891 TCTCTG-GCGCTCACCGTCCTCTTGACTGC-ACCCTCGGTCTTTTCATACCCGGTATAGA 221948 | |||| || | | || ||| ||| | ||||| ||| | || | |||||| Sbjct 460714 T-TCTGAGCACGGATGGT-CTCACGACCACGGCCCTCCTTCTCGT-ATTTCTCGTATAGG 460770 Query 221949 GCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCA 222008 || ||||||| ||| ||||| | ||| | ||||| || |||||| | | Sbjct 460771 GC--CTCAAACTCTTCGCCGTAGACATCGGCGAGGCCAGGTGCTTCATTGGGACAGAAGA 460828 Query 222009 GACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCT 222068 | |||| || | || || | | |||||| || || || |||||| || | Sbjct 460829 GTGTCCACATACCATTCTGTTCAACTCGTTTCATGAACAGATCAGGCGTCCACAAAGCAT 460888 Query 222069 GAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACT 222128 |||||||| | | || | ||| ||| |||| ||| || | || || | | Sbjct 460889 AGAAGAGATCACGAGCACGGTTCTCTTCCTTACCGTGGTTCTTGCGCAAGTCAAGCCAGC 460948 Query 222129 CAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGC 222188 ||||||||||||| ||||| ||||| || || | ||| | ||| ||||| |||||||||| Sbjct 460949 CAAAAATGTCAGCATGCCATGGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTTGC 461008 Query 222189 CACCCTGATCCACCATCCTCTCCAG----AGCGTTGAAGATGCGAAGGGTCGGTACCAGT 222244 ||||||||| || | | || || || | | ||| || | | || | || Sbjct 461009 CACCCTGAT----CAACATATCGAGCGGTGGCATCGTAGACACGCAACATAGGAATTAGA 461064 Query 222245 CCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACC-GCCGGCC--CTCAGGT-TACT 222300 ||||||||| |||||||| || |||||||| ||| | || | | ||| ||| Sbjct 461065 CCGTTGGATGTGCCGTTGGTACCACCAATGTACGAACCAGTCGCACGAATGCGGTGTACG 461124 Query 222301 GGCAGACATGCCGATACCACCGGC-GTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGT 222359 |||| ||||| |||||||| || ||| || ||||| || ||| ||||||| |||| Sbjct 461125 TTCAGA----CCGATGCCACCGGCAGTCTTT-GAAATCATAGCACAGGTCTTGAGCGTGT 461179 Query 222360 CCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAG 222419 | ||||||||| || ||||||||| | | | || || || || || | ||| | Sbjct 461180 CGTAGATGCCCTCTATGCTGTCCTCCTTCATATCGATGAGGAAGCAGGAGGAGAGCTGCG 461239 Query 222420 ATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACA 222479 | | | || |||||||| |||||| |||||||| ||||| | |||| Sbjct 461240 GCGACGGCGTGCCAGCATTAAACAGAGTGGGAGACGCGTGTGTGAAGTACTTATTCGACA 461299 Query 222480 TCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCA-- 222537 | ||||| ||||| | | | || | |||| || ||||| | ||| |||| Sbjct 461300 TGTAGTCGTAAGTCTCAATGGCACTCTCAATGTCTTCACCGTG--TATGCCAACCGCAAC 461357 Query 222538 TCTCATGTACATGTACTGGGGCCTCT---CCACAGGACCCTTGGAGCTGGAGAGCAGGTA 222594 | ||| ||||| ||| || |||| |||| || || || ||||| ||||| Sbjct 461358 ACGCATAATCATGTGCTGTGGTCTCTCTGCCACCTTGCCATT-GATTCGGAGA--AGGTA 461414 Query 222595 CGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCAC 222654 || | |||| || ||||| ||||| || | | || ||||| | | ||| ||| | Sbjct 461415 GGACCTCTCCAATGTTTTGAAGCCAAAATACTGGTAGTTGAAGTCACGGTCGTAAACGAT 461474 Query 222655 GGCGGCGTCCAGCTC 222669 ||| | || |||||| Sbjct 461475 GGCCGAGTTCAGCTC 461489 >seq15 Length=603150 Score = 141 bits (156), Expect = 2e-28 Identities = 291/436 (67%), Gaps = 7/436 (2%) Strand=Plus/Plus Query 25888 GCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTC 25947 ||||| ||||| |||||||||||||| ||| ||| | ||||| ||||||||||||| Sbjct 375920 GCCTTCGCTGCCGTGGAGGGCATCTTCTTCTCTGGTGCCTTTGCTTCCATCTTCTGGCTT 375979 Query 25948 AAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAG 26007 ||| || || |||||| || || ||| |||||||||||||| | |||||| Sbjct 375980 AAGAAGCGAGGTCTCATGCCGGGCTTGACCTTCTCCAACGAGCTCATTTCACGCGACGAG 376039 Query 26008 GGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCT 26067 ||| | |||| || || ||||||||||||| || || | | | || || ||| Sbjct 376040 GGTATGCACACCGACTTCGCCTGCCTGCTCTTCA---GCATGATTCAAAATAAGCCGTCT 376096 Query 26068 CAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNN 26127 | |||| | || ||||||| |||||||| |||||||| ||||| | Sbjct 376097 CCAGAGTCGGTGCGTGCCATCATCACCGAGGCTGTCTCCATCGAGAAAGAGTTCCTCACC 376156 Query 26128 NNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGA-CTCATGAGCCAATACATTGA 26186 | || ||||| |||| || ||| |||| |||||||| Sbjct 376157 GAAGCCCTGCCTTGCCGCCTGCTCGGTATGAA-TGCAGACCTTATGTGCCAGTACATTGA 376215 Query 26187 GTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTA 26245 || ||| || |||| |||| || | || || | | | | |||| || | | Sbjct 376216 GTTTGTAGCAGACCGCTTGCTCATGGC-TCTCGGCAACACAAAGGTGTACAACGCGACGA 376274 Query 26246 ACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGA 26305 ||||||||||||| ||||| ||||| ||| ||| ||| ||||| || ||||| || ||| Sbjct 376275 ACCCGTTCGACTTCATGGAGAACATCTCGCTGGCAGGCAAGACAAATTTCTTCGAGAAGC 376334 Query 26306 GGGTCGGCGACTATCA 26321 | || |||||||| || Sbjct 376335 GCGTTGGCGACTACCA 376350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928840538924480