Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq23 96.9 2e-14 seq48 87.8 1e-11 >seq23 Length=461238 Score = 96.9 bits (106), Expect = 2e-14 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || |||||||| ||||| || || | || || ||||| || ||||| || ||||| Sbjct 205248 ATCCTCCAGTTGCTTACCAGCGAAGATCAAGCGCTGCTGATCTGGTGGAATACCCTCCTT 205189 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 |||||||||||| || ||| ||||| || || | | | | ||| ||||| || Sbjct 205188 GTCTTGAATCTTGGTCTTCACATTGTCAATCGTGTCTGAGGATTCAACTTCTAGGGTGAT 205129 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| ||||| ||||||||||| Sbjct 205128 CGTCTTTCCTGTGAGCGTCTTCACGAAAATTTG 205096 >seq48 Length=172814 Score = 87.8 bits (96), Expect = 1e-11 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 || ||||||||||||||||||||||| ||||| ||| | ||||| || || ||||| Sbjct 7526 GCCGTAATTACTGTTCCAGCATATTTCAATGACAATCAGAGACAAGCTACCAAGGATGCC 7467 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || ||| | || || || || | || ||||| || ||||| || || ||||| || Sbjct 7466 GGCTCAATCTCTGGCCTGAACGTACTCCGAATTATCAACGAACCTACTGCTGCCGCCATT 7407 Query 474857 GCTTATGGTCTTG 474869 || ||||| |||| Sbjct 7406 GCGTATGGACTTG 7394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268163457589316