Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq10 293 3e-74 seq15 118 1e-21 >seq10 Length=848763 Score = 293 bits (324), Expect = 3e-74 Identities = 1176/1820 (65%), Gaps = 45/1820 (2%) Strand=Plus/Minus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTCGATGGCATCCTCATG 75205 || ||||| ||||||| | |||| | ||| |||| || || |||||| | Sbjct 461444 TATTTTGGCTTCAAAACATTGGAGAGGTCCTACCTTCTCCGAATCAATGGCAAGGTGGCA 461385 Query 75206 GAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGAT 75265 || | |||||| ||||| | ||||| || || | ||||| ||||| ||||||||||| Sbjct 461384 GAGAGACCACAGCACATGATTATGCGTGTTGCGGTTGGCATACACGGTGAAGACATTGAG 461325 Query 75266 TCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAAC 75324 || | | ||||| |||||| | ||||| | | ||| |||| ||||| | || || Sbjct 461324 AGTGCCATTGAGACTTACGACTACATGTCGAATAAGTAC-TTCACACACGCGTCTCCCAC 461266 Query 75325 CCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAA 75384 || || |||||||| || || |||||| | ||| |||||||| |||| | || Sbjct 461265 TCTGTTTAATGCTGGCACGCCGTCGCCGCAGCTCTCCTCCTGCTTCCTCATCGATATGAA 461206 Query 75385 GGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTG 75444 ||||||| || | || ||||| | || || | | ||||| || |||||| Sbjct 461205 GGAGGACAGCATAGAGGGCATCTACGACACGCTCAAGACCTGTGCTATGATTTCAAAGAC 461146 Query 75445 GGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGG 75504 || || || || || || || | || | | || | | || ||| | || Sbjct 461145 TGCCGGTGGCATCGGTCTGAACGTACACCGCATTCGTGCGACTGGTTCGTACATTGGTGG 461086 Query 75505 GACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCG 75564 || || || ||| | ||| | ||||| ||| | || || | | ||||| || || Sbjct 461085 TACCAACGGCACATCCAACGGTCTAATTCCTATGTTGCGTGTCTACGATGCCACCGCTCG 461026 Query 75565 CTATGTAAATCAAGCGGGGCGTC----GCAAGGGGTCCATCGCGGTCTACTTGGAACCAT 75620 ||||| |||| | | ||| | || || | |||| | ||| | || |||| Sbjct 461025 ATATGTTGATCAGG-GTGGCAACAAGCGCCCCGGTGCTTTCGCCATTTACCTTGAGCCAT 460967 Query 75621 GGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTC 75680 ||||||| || || | | | ||||| || || ||||| ||| | |||||| | Sbjct 460966 GGCATGCTGACATTTTTGGCTGGCTTGACTTGCGCAAGAACCACGGTAAGGAAGAGAACC 460907 Query 75681 GGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGG 75740 | | | |||||||| | | |||||| || || || |||||||| || ||||| Sbjct 460906 GTGCTCGTGATCTCTTCTATGCTTTGTGGACGCCTGATCTGTTCATGAAACGAGTTGAAC 460847 Query 75741 AGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGG 75800 || |||| ||| | || |||||||| | | ||||| || ||| |||| | | Sbjct 460846 AGAATGGTATGTGGACACTCTTCTGTCCCAATGAAGCACCTGGCCTCGCCGATGTCTACG 460787 Query 75801 GTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTG 75860 | || |||||||| ||||| ||| || || || ||||||| | | || ||| Sbjct 460786 GCGAAGAGTTTGAGGCCCTATACGAGAAATACGAGAAGGAGGGCCGTGGTCGTGAGACCA 460727 Query 75861 TACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCA 75919 | || | | || | | ||| | || ||||| | ||||||| |||||||| | || Sbjct 460726 T-CCGTGCTCAGAAGCTGTGGTATGCCATTCTTCAGGCACAGACCGAGACTGGCAATCCC 460668 Query 75920 TATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATC 75979 | ||||| |||||||| ||||| ||| ||||| ||||| || || ||||||| ||| Sbjct 460667 TTCATGCTCTACAAGGACGCTTGCAACCGCAAGAGCAACCAGAAAAACCTGGGAACCATC 460608 Query 75980 AAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTT 76039 ||||| || |||||||| || || | |||||||| | || ||| || || Sbjct 460607 CGCAGCTCCAACCTTTGCACCGAGATCATTGAGTACACTGCCCCAGACGAGGTCGCGGTG 460548 Query 76040 TGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGAT 76099 || || ||||| || | || || |||| | |||| ||| | | || | || Sbjct 460547 TGTAACTTGGCCTCTCTGGCTCTGCCAACCTTTGTCGATGTCATGCGTGGCGAATACGAC 460488 Query 76100 TATGAAAAACTTCATGAAATCAC---AAAGATTGTTACCAAAAATCTAAACCGAG-TCAT 76155 | | || || ||||| |||| | | ||| ||| || | | || |||| Sbjct 460487 TTCAAGAAGCTGCATGAGGTCACCCGCCATGTCGTTCGCAA----CTTGAACAAGATCAT 460432 Query 76156 TGACAGAAATTTTTATCCCGT-TGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTA 76214 |||| || || || || ||| || || || ||| ||| ||||| | |||| Sbjct 460431 CGACATTAACCACTACCCTGTACCAGA-GGCACGTAACAGTAACATGAGACACCGTCCTA 460373 Query 76215 TTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTAT-TTTGTGCCGCTACGCATTTGAT 76273 | ||| | ||||| || ||||| || |||| || | | ||| ||| | |||| || Sbjct 460372 TCGGTGTCGGTGTGCAGGGTCTTGCCGATGCTTTCCTCGCTCTGCGGCTGC-CATTCGAC 460314 Query 76274 TCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTG 76333 || || || | |||| | |||||||||||||| || ||||| | ||| Sbjct 460313 TCTCCAGAGGCTCGTATGCTGAACATCCAAATCTTTGAAACCATATACCACGCCGCTCTG 460254 Query 76334 GAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCC 76393 || ||||| | || ||| |||||| ||||| || | |||||| || ||| Sbjct 460253 ACAGCTTCGTGTGAGCTTGCCAAAGAGCAAGGTCCCTATTCGAGTTATGAGGGCTCGCCC 460194 Query 76394 GCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAA--GCTCAACTACG 76451 | |||||| ||| | | |||| ||| |||| |||| |||| |||| | || || | Sbjct 460193 GTGTCCCAGGGGATTTTGCAGTATGACATGT-GGAACGTGACTCCAACTGATC-TCTGGG 460136 Query 76452 ACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTT--TGAT 76509 ||||||| ||||| | ||||| || | ||| | || ||| || || | | Sbjct 460135 ACTGGGACAGCCTCAAAGCTGAGATCAAAAAGCATGGTGTCCGCAAC--TCCTTACTCGT 460078 Query 76510 GGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACC 76569 ||| || |||||||| || || || | || ||| ||||||| || || ||||| || || Sbjct 460077 GGCGCCCATGCCAACCGCTTCAACTTCTCAGATCCTGGGTAACAACGAGTGCTTCGAGCC 460018 Query 76570 ATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAA 76629 ||| || ||||||||||| | | ||||| || |||| || ||| ||| Sbjct 460017 ATATACCTCAAACATCTACTCACGTCGCGTGCTCGCCGGCGAGT---TCCAGGTCGTCAA 459961 Query 76630 GCACCTCG----TCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATC 76685 | | | | |||| || ||| | || ||| | ||||| | |||||||| | | Sbjct 459960 TC-CTTGGTTGCTCAAAGATCTCGTTGACATGGGTTTGTGGTCTGACAATATGAAGAACC 459902 Query 76686 TCATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATA-TCAAG 76744 ||| | | ||||||||| ||||| || || | || |||||||||| | ||| Sbjct 459901 GCATCATTGCGGAGGGTGGTTCGATTCAGCGCATTCCAAACATTCCAGATGATATTAAAG 459842 Query 76745 AATCTCTACCGCACAGTGTGGGAAATCAAGATGAAAG--ATGTCATTGACATGGCCGCAG 76802 || | ||| || || |||||||| ||| || | ||||||| | |||||||| | Sbjct 459841 CAT-TGTACAAGACGGTCTGGGAAAT-AAG-CCAACGCCATGTCATCCAGATGGCCGCCG 459785 Query 76803 ATCGTGGTCGC-TTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACG 76861 ||||||| ||| |||||||| ||| || | | || | |||| | |||||| Sbjct 459784 ATCGTGG-CGCGTTCATTGACCAATCCCAGTCTCTCAACATCCACATGAAGGAACCAACG 459726 Query 76862 ATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATG 76921 ||| |||| || | || |||||| | | ||||| | || ||||| || || ||| Sbjct 459725 ATGGGCAAGATCACCTCCATGCATTTCGCTGGCTGGAAGCTCGGTCTCAAGACTGGCATG 459666 Query 76922 TACTATCTCCGATCAAAGGC 76941 |||||||| || || |||| Sbjct 459665 TACTATCTGCGTACACAGGC 459646 >seq15 Length=603150 Score = 118 bits (130), Expect = 1e-21 Identities = 300/453 (66%), Gaps = 10/453 (2%) Strand=Plus/Plus Query 65069 CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCAT 65128 |||||||| ||||| | || || || |||||||| ||||||||||| || | | Sbjct 375900 CCTTCGCCTCACGCCTCATCGCCTTCGCTGCCGTGGAGGGCATCTTCTTCTCTGGTGCCT 375959 Query 65129 TCTGC-GCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 | ||| | || | ||| | |||||||| ||||||||||| ||| | |||||| || Sbjct 375960 T-TGCTTCCATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCGGGCTTGACCTTCTCCAAC 376018 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACT 65247 || || ||||| || || |||||| | ||| || || ||| |||||||| | Sbjct 376019 GAGCTCATTTCACGCGACGAGGGTATGCACACCGACTTCGCCTGCCTGCTCTTCAGCATG 376078 Query 65248 TTGCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATT 65307 | | |||| || || | || | | | |||||| | | ||||| || || Sbjct 376079 ATTCAAAATAAGCCGTCTCCAGAGTCGGTGCGTGCCATCATCACCGAGGCTGTCTCCATC 376138 Query 65308 GAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAG 65367 ||||||| |||| || || || || || || || |||||||||| | || Sbjct 376139 GAGAAAGAGTTCCTCACCGAAGCCCTGCCTTGCCGCCTGCTCGGTATGAATGCAGACCTT 376198 Query 65368 ATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCCACCC 65427 |||| | |||||||||||| ||| | || || | |||| | | || || | Sbjct 376199 ATGTGCCAGTACATTGAGTTTGTAGCAGACCGCTTGCTCATGGCTCTCG----GCAACAC 376254 Query 65428 A----TTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAA 65483 | | | ||||||| ||| || || ||||| ||||| ||||| || | || || Sbjct 376255 AAAGGTGTACAACGCGACGAACCCGTTCGACTTCATGGAGAACATCTCGCTGGCAGGCAA 376314 Query 65484 GACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 ||| || ||||| |||||||| ||||| ||||| Sbjct 376315 GACAAATTTCTTCGAGAAGCGCGTTGGCGACTA 376347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596566863236960