Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23]
367 sequences; 31,780,469 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq10 89.7 2e-12
seq29 87.8 5e-12
seq22 84.2 6e-11
>seq10
Length=848763
Score = 89.7 bits (98), Expect = 2e-12
Identities = 172/253 (68%), Gaps = 3/253 (1%)
Strand=Plus/Plus
Query 155910 ACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGAC 155969
|| || | ||| || | |||| || ||| | ||||||||| || || | || |
Sbjct 460852 ACTCGTTTCATGAACAGATCAGGCGTCCACAAAGCATAGAAGAGATCACGAGCACGGTTC 460911
Query 155970 TCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGC 156029
|| || | ||||| ||||| || | || | | | ||| |||| ||| ||||
Sbjct 460912 TCTTCCTTACCGTGGTTCTTGCGCAAGTCAAGCCAGCCAAAAATGTCAGCATGCCATGGC 460971
Query 156030 TCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCA 156086
|| || || || || ||| ||| | |||| ||||||||||| ||||| |||||
Sbjct 460972 TCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTTGCCACCCTGATCAACATATCGAGCG 461031
Query 156087 GTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGA 156146
|| || | |||||| | ||||||||| | ||| ||||| ||||| ||||| || | |
Sbjct 461032 GTGGCATCGTAGACACGCAACATAGGAATTAGACCGTTGGATGTGCCGTTGGTACCACCA 461091
Query 156147 ATATGCGAACCAG 156159
|| | ||||||||
Sbjct 461092 ATGTACGAACCAG 461104
>seq29
Length=351414
Score = 87.8 bits (96), Expect = 5e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 289036 GCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAAT 289095
||||| ||||| |||||||| || | || || | |||| | || | || || ||
Sbjct 320015 GCATCGATTTCATCAATGAATATGATGCAAGGTGTGTTTTTCCGAGCTGTCGCGAACAAA 320074
Query 289096 TCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACT 289155
|||| ||||| |||| |||| || || ||||||| |||||||||||| | || ||
Sbjct 320075 TCTCGAACACGCGATGGACCAACTCCGACGAACATTTCAACAAATTCAGAACCAGACACG 320134
Query 289156 TGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTT 289215
| ||||| ||| || ||| || || || | ||||||||||| ||||| |||
Sbjct 320135 GAGAAGAATGGCACACCTGATTCTCCCGCAGTAGCTTTTGCCAGAAGTGTTTTACCCGTT 320194
Query 289216 CCAGGTGGTCC 289226
|| || |||||
Sbjct 320195 CCTGGAGGTCC 320205
>seq22
Length=482228
Score = 84.2 bits (92), Expect = 6e-11
Identities = 108/147 (73%), Gaps = 4/147 (3%)
Strand=Plus/Plus
Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872
||| || ||||| ||| || ||||| | || ||||| |||||| || ||||||||
Sbjct 213310 AGATTTCCTTCAG-ACGAGGCACACCGAGAGTAACGTT---CTTGGAAGCCACACCAGCG 213365
Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932
|| ||||| |||||||| || | || |||| ||||||||||| ||||| || |
Sbjct 213366 AAATGGAAGGTATTCAGCGTCATCTGGGTAGCCGGCTCACCAATGGACTGTGCAGCCAAA 213425
Query 301933 ATACCAACCATTTCTCCTGGTGCTACA 301959
| ||||||||| || || || || |||
Sbjct 213426 ACACCAACCATATCGCCAGGAGCGACA 213452
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471810679237679
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |