Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq10 89.7 2e-12 seq29 87.8 5e-12 seq22 84.2 6e-11 >seq10 Length=848763 Score = 89.7 bits (98), Expect = 2e-12 Identities = 172/253 (68%), Gaps = 3/253 (1%) Strand=Plus/Plus Query 155910 ACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGAC 155969 || || | ||| || | |||| || ||| | ||||||||| || || | || | Sbjct 460852 ACTCGTTTCATGAACAGATCAGGCGTCCACAAAGCATAGAAGAGATCACGAGCACGGTTC 460911 Query 155970 TCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGC 156029 || || | ||||| ||||| || | || | | | ||| |||| ||| |||| Sbjct 460912 TCTTCCTTACCGTGGTTCTTGCGCAAGTCAAGCCAGCCAAAAATGTCAGCATGCCATGGC 460971 Query 156030 TCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCA 156086 || || || || || ||| ||| | |||| ||||||||||| ||||| ||||| Sbjct 460972 TCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTTGCCACCCTGATCAACATATCGAGCG 461031 Query 156087 GTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGA 156146 || || | |||||| | ||||||||| | ||| ||||| ||||| ||||| || | | Sbjct 461032 GTGGCATCGTAGACACGCAACATAGGAATTAGACCGTTGGATGTGCCGTTGGTACCACCA 461091 Query 156147 ATATGCGAACCAG 156159 || | |||||||| Sbjct 461092 ATGTACGAACCAG 461104 >seq29 Length=351414 Score = 87.8 bits (96), Expect = 5e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 289036 GCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAAT 289095 ||||| ||||| |||||||| || | || || | |||| | || | || || || Sbjct 320015 GCATCGATTTCATCAATGAATATGATGCAAGGTGTGTTTTTCCGAGCTGTCGCGAACAAA 320074 Query 289096 TCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACT 289155 |||| ||||| |||| |||| || || ||||||| |||||||||||| | || || Sbjct 320075 TCTCGAACACGCGATGGACCAACTCCGACGAACATTTCAACAAATTCAGAACCAGACACG 320134 Query 289156 TGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTT 289215 | ||||| ||| || ||| || || || | ||||||||||| ||||| ||| Sbjct 320135 GAGAAGAATGGCACACCTGATTCTCCCGCAGTAGCTTTTGCCAGAAGTGTTTTACCCGTT 320194 Query 289216 CCAGGTGGTCC 289226 || || ||||| Sbjct 320195 CCTGGAGGTCC 320205 >seq22 Length=482228 Score = 84.2 bits (92), Expect = 6e-11 Identities = 108/147 (73%), Gaps = 4/147 (3%) Strand=Plus/Plus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 ||| || ||||| ||| || ||||| | || ||||| |||||| || |||||||| Sbjct 213310 AGATTTCCTTCAG-ACGAGGCACACCGAGAGTAACGTT---CTTGGAAGCCACACCAGCG 213365 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || ||||| |||||||| || | || |||| ||||||||||| ||||| || | Sbjct 213366 AAATGGAAGGTATTCAGCGTCATCTGGGTAGCCGGCTCACCAATGGACTGTGCAGCCAAA 213425 Query 301933 ATACCAACCATTTCTCCTGGTGCTACA 301959 | ||||||||| || || || || ||| Sbjct 213426 ACACCAACCATATCGCCAGGAGCGACA 213452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471810679237679