Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq15 150 2e-30 seq1 138 1e-26 seq10 100 3e-15 >seq15 Length=603150 Score = 150 bits (166), Expect = 2e-30 Identities = 231/322 (72%), Gaps = 7/322 (2%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||||| |||||| |||||| || || |||||||| | |||||||| Sbjct 376356 GCCTTCTGGTAGTCGCCAACGCGCTTCTCGAAGAAATTTGTCTTGCCTGCCAGCGAGATG 376297 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||||||||| | || ||||| |||| | ||||| | | | Sbjct 376296 TTCTCCATGAAGTCGAACGGGTTCGTCGCGTTGTACACCTTTGTGTTGCCGAGAGCCATG 376237 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 |||| |||||| || |||||||| |||||||||||||| ||| | || ||||| |||| Sbjct 376236 AGCAAGCGGTCTGCTACAAACTCAATGTACTGGCACATAAGGTCTGCATTCATACCGAGC 376177 Query 868871 A-GCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGAT 868929 | ||| || ||||| | ||| | | |||||||||||||| ||| |||||| ||| Sbjct 376176 AGGCGGCA-AGGCAGGGCTTCGGTGAGGAACTCTTTCTCGATGGAGACAGCCTCGGTGAT 376118 Query 868930 GATCTGCCTGGGC--ACGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAG 868987 ||| || | | || || | || ||||| || | ||| || ||||||||||| Sbjct 376117 GAT-GGCACGCACCGAC-TCTGGAGACGGCTTATTTTGAATCATGCTGAAGAGCAGGCAG 376060 Query 868988 GCAAAGTCGCAGTGCA-ACCCT 869008 || |||||| ||||| ||||| Sbjct 376059 GCGAAGTCGGTGTGCATACCCT 376038 Score = 96.9 bits (106), Expect = 4e-14 Identities = 172/247 (70%), Gaps = 7/247 (3%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| |||||||| ||||| |||||||||||||| ||| | |||||| | || Sbjct 375699 GAGTGAATGTTCTCCATGGCAATCTGGAAGCCGTAGAAGCAGCGTGCCTCTGGAATCTGT 375640 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||| || || | ||||||||| ||||||||| || |||||||| Sbjct 375639 ACTTCTGCGCTGAAGCGTTCGACTAGGTTCTCGTTCACGATGCCATCCGACGCGGCGAAG 375580 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAG-CG--ACACCCAGT-- 869807 || || |||| |||| ||| ||| ||||||||| ||| | || || ||||| Sbjct 375579 AAGGCGAGGATGTGCGAGATGAAGAAGCGCTCGTCATCGTTAAGACGGTTGTTCCAGTCA 375520 Query 869808 GGACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTT 869867 ||| |||| | || || | |||||| || ||||||| || ||| ||||| | Sbjct 375519 GGA--ATGTCCTTGGACAGATCGATCTCCTCTGCAGTCCAGAAGGATGCCATTGCCTTCT 375462 Query 869868 TGTACAT 869874 ||||||| Sbjct 375461 TGTACAT 375455 Score = 89.7 bits (98), Expect = 6e-12 Identities = 109/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| |||||||| || | |||||| |||| | ||| |||||||| || ||||| Sbjct 376042 ACCCTCGTCGCGTGAAATGAGCTCGTTGGAGAAGGTCAAGCCCGGCATGAGACCTCGCTT 375983 Query 869239 CTTGAGCCAAAAGATGGC-GCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 869297 ||| ||||| ||||||| ||| | | || ||||| ||||||||||| ||||| || | Sbjct 375982 CTTAAGCCAGAAGATGGAAGCAAAGGCA-CCAGAGAAGAAGATGCCCTCCACGGCAGCGA 375924 Query 869298 AGCCGATGAGCCGCTCGGCAAAGGTG 869323 || ||||||| || ||| |||||| Sbjct 375923 AGGCGATGAGGCGTGAGGCGAAGGTG 375898 >seq1 Length=1367393 Score = 138 bits (152), Expect = 1e-26 Identities = 108/129 (84%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 || ||||| | ||||| ||||||||||| ||||||||||| | || || || | || Sbjct 50801 CTGTTTGAAATCATCCTTGCCGCCAACTATCTCGACATCAAAGCCCTACTGGACGTCGGC 50860 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 |||||| | ||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 50861 TGCAAGACCGTGGCCAACATGATCAAGGGCAAGTCGCCAGAGGAGATCCGCAAGACGTTC 50920 Query 1592288 AACATCAAG 1592296 |||||| || Sbjct 50921 AACATCCAG 50929 >seq10 Length=848763 Score = 100 bits (110), Expect = 3e-15 Identities = 202/300 (67%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||| || || || || || ||| | | |||| || | ||| || | || |||||||| Sbjct 461013 CTGATCAACATATCGAGCGGTGGCATCGTAGACACGCAACATAGGAATTAGACCGTTGGA 461072 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||||||| || | | ||| | || | || || | ||| || | || Sbjct 461073 TGTGCCGTTGGTACCACCAATGTACGAACCAGTCGCACGAATGCGGTGTACGTTCAGACC 461132 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 |||||| ||||| | ||| || || | || || ||||||||||||||||||||||| Sbjct 461133 GATGCCACCGGCAGTCTTTGAAATCATAGCACAGGTCTTGAGCGTGTCGTAGATGCCCTC 461192 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||| ||||||| || | ||| ||||| || ||| ||||| || |||||| Sbjct 461193 TATGCTGTCCTCCTTCATATCGATGAGGAAGCAGGAGGAGAGCTGCGGCGACGGCGTGCC 461252 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 || || || || ||||| | ||| ||||| ||| ||||||| |||||| || Sbjct 461253 AGCATTAAACAGAGTGGGAGACGCGTGTGTGAAGTACTTATTCGACATGTAGTCGTAAGT 461312 Score = 98.7 bits (108), Expect = 1e-14 Identities = 283/438 (65%), Gaps = 12/438 (3%) Strand=Plus/Plus Query 1628169 GATCTCGGTGCACAGGTTGGCCGACGTCG-TCGTACCCAGGTTCTGCTGGTTGGTGGTCA 1628227 |||||||||||| ||||||| | | | | || |||||||| | ||||||| | | Sbjct 460581 GATCTCGGTGCAAAGGTTGGA-GCTGCGGATGGTTCCCAGGTTTTTCTGGTTGCTCTTGC 460639 Query 1628228 GGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACGA 1628287 ||||| |||||||||| ||||||| |||| ||| |||||| |||| ||| | | Sbjct 460640 GGTTGCAAGCGTCCTTGTAGAGCATGAAGGGATTGCCAGTCTCGGTCTGTGCCTGAAGAA 460699 Query 1628288 TGGCCGACCAGATCTGGCGCGCGGGCACGACAGTC---CGCGCGCGGCCCTNNNNNNNNN 1628344 |||| |||| | || | || | | | ||| || | ||||||| Sbjct 460700 TGGCATACCACAGCTTCTGAGCACGGATG---GTCTCACGACCACGGCCCTCCTTCTCGT 460756 Query 1628345 NNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGCCTCGG 1628404 ||||| | |||||||| ||| ||||| || || || Sbjct 460757 ATTTCTCGTATAGGGCCTCAAACTCTTCGCCGTAGACATCGGCGAGGCCAGGTGCTTCAT 460816 Query 1628405 ACGGACAAAAGAGCGACCAGTCGCCA--CCGGTCACCGCGCGGCGCATAAAGAGGTCACA 1628462 ||||| ||||| | ||| ||| | | ||| | || | || || || ||| Sbjct 460817 TGGGACAGAAGAGTGTCCACATACCATTCTGTTCAACTCGTTTC--ATGAACAGATCAGG 460874 Query 1628463 CGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTT 1628522 |||||||| || || ||||| || || || |||||||| ||||| ||||||||||| Sbjct 460875 CGTCCACAAAGCATAGAAGAGATCACGAGCACGGTTCTCTTCCTTACCGTGGTTCTTGCG 460934 Query 1628523 GAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCC 1628582 | ||| |||||| | | |||||| || ||||| ||||| ||||| ||| || || || Sbjct 460935 CAAGTCAAGCCAGCCAAAAATGTCAGCATGCCATGGCTCAAGGTAAATGGCGAAAGCACC 460994 Query 1628583 CTTGCGCTTGCCGCCGCC 1628600 ||||||| ||| || Sbjct 460995 GGGGCGCTTGTTGCCACC 461012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107109082261339