Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1 138 2e-26 seq15 132 8e-25 seq10 104 4e-16 seq22 86.0 1e-10 >seq1 Length=1367393 Score = 138 bits (152), Expect = 2e-26 Identities = 108/129 (84%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 2035629 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGG 2035688 || ||||| | ||||| ||||||||||| ||||||||||| |||| || || | || Sbjct 50801 CTGTTTGAAATCATCCTTGCCGCCAACTATCTCGACATCAAAGCCCTACTGGACGTCGGC 50860 Query 2035689 TGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTT 2035748 |||||||||||||||||| | ||||||||||||||||| ||||| ||||||||||| || Sbjct 50861 TGCAAGACCGTGGCCAACATGATCAAGGGCAAGTCGCCAGAGGAGATCCGCAAGACGTTC 50920 Query 2035749 AACATCAAG 2035757 |||||| || Sbjct 50921 AACATCCAG 50929 >seq15 Length=603150 Score = 132 bits (146), Expect = 8e-25 Identities = 230/328 (70%), Gaps = 6/328 (2%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || ||||| |||||| |||||| || || |||||||| | | Sbjct 376364 TGACACCGGCCTTCTGGTAGTCGCCAACGCGCTTCTCGAAGAAATTTGTCTTGCCTGCCA 376305 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 ||||||| |||||| | ||||||||| | || ||| ||| | |||| Sbjct 376304 GCGAGATGTTCTCCATGAAGTCGAACGGGTTCGTCGCGTTGTACACCTTTGTGTTGCCGA 376245 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | | |||| |||||| || || || ||||||||||||||||| ||| | || |||| Sbjct 376244 GAGCCATGAGCAAGCGGTCTGCTACAAACTCAATGTACTGGCACATAAGGTCTGCATTCA 376185 Query 794071 TGCCGATGA-GCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129 | |||| | ||| || ||||| | ||| ||| |||||||||||||| ||| ||| Sbjct 376184 TACCGAGCAGGCGGCA-AGGCAGGGCTTCGGTGAGGAACTCTTTCTCGATGGAGACAGCC 376126 Query 794130 TCGATGATGATCTGCCTGGGC--ACGTCGGACGACGGCTTGTCGACGAGCATCGTGTAGA 794187 ||| ||||||| || | | || || | |||||||| | | ||| || ||| Sbjct 376125 TCGGTGATGAT-GGCACGCACCGAC-TCTGGAGACGGCTTATTTTGAATCATGCTGAAGA 376068 Query 794188 GCAGGCAGGCAAAGTCGCAATGCAGACC 794215 |||||||||| |||||| |||| ||| Sbjct 376067 GCAGGCAGGCGAAGTCGGTGTGCATACC 376040 Score = 86.0 bits (94), Expect = 1e-10 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 794591 TGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCT 794650 ||| ||| |||||||| || |||||||| ||||| ||||| ||||| || ||||| |||| Sbjct 375734 TGATGTACGTGTCGATAAGCAGCGAGTACGTCTCGGAGTGAATGTTCTCCATGGCAATCT 375675 Query 794651 GGAAGCCATAAAAGCAG 794667 ||||||| || |||||| Sbjct 375674 GGAAGCCGTAGAAGCAG 375658 >seq10 Length=848763 Score = 104 bits (114), Expect = 4e-16 Identities = 288/440 (65%), Gaps = 16/440 (4%) Strand=Plus/Plus Query 2071581 GACCTCGGTGCACAGGTTGGCCGACATCG--TGGTGCCCAGGTTCTGCTGGTTGCTGGTC 2071638 || ||||||||| ||||||| | || |||| |||||||| | ||||||||| | Sbjct 460581 GATCTCGGTGCAAAGGTTGGAG--CTGCGGATGGTTCCCAGGTTTTTCTGGTTGCTCTTG 460638 Query 2071639 AGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACG 2071698 ||||| |||||||||| |||||| |||| || |||||| |||| ||| ||| | Sbjct 460639 CGGTTGCAAGCGTCCTTGTAGAGCATGAAGGGATTGCCAGTCTCGGTCTGTGCC-TGAAG 460697 Query 2071699 A-TGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCG----CGGCCCTNNNNNN 2071753 | |||| |||| | || | |||| || | ||| || ||||||| Sbjct 460698 AATGGCATACCACA----GCTTCTGAGCACGGATGGTCTCACGACCACGGCCCTCCTTCT 460753 Query 2071754 NNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCT 2071813 | ||||| ||||| | |||||| | ||| ||||| || || | Sbjct 460754 CGTATTTCTCGTATAGGGCCTCAAACTCTTCGCCGTAGACATCGGCGAGGCCAGGTGCTT 460813 Query 2071814 CGGACGGGCAAAAGAGCGACCAGTCGCCGC-CAGTCACCACGCGGCGCATAAACAGGTCG 2071872 | || || ||||| | ||| || | || | || || ||| ||||| || Sbjct 460814 CATTGGGACAGAAGAGTGTCCACATACCATTCTGTT-CAACTCGTTTCATGAACAGATCA 460872 Query 2071873 CACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTT 2071932 |||||||| | || |||||||| || || |||||||| ||||| ||||||||||| Sbjct 460873 GGCGTCCACAAAGCATAGAAGAGATCACGAGCACGGTTCTCTTCCTTACCGTGGTTCTTG 460932 Query 2071933 TTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCG 2071992 || ||| |||||| | | | ||| || ||||| ||||| ||||| ||| || || Sbjct 460933 CGCAAGTCAAGCCAGCCAAAAATGTCAGCATGCCATGGCTCAAGGTAAATGGCGAAAGCA 460992 Query 2071993 CCCTTGCGCTTGCCGCCGCC 2072012 || ||||||| ||| || Sbjct 460993 CCGGGGCGCTTGTTGCCACC 461012 Score = 93.3 bits (102), Expect = 7e-13 Identities = 179/264 (68%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||| || ||||| || || ||| | | |||| || | ||| || | || |||||||| Sbjct 461013 CTGATCAACATATCGAGCGGTGGCATCGTAGACACGCAACATAGGAATTAGACCGTTGGA 461072 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||||||||| || | | ||| | || | || || | ||| || | || Sbjct 461073 TGTGCCGTTGGTACCACCAATGTACGAACCAGTCGCACGAATGCGGTGTACGTTCAGACC 461132 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 |||||| ||||| | ||| || || | || || | || ||||| |||||||||||||| Sbjct 461133 GATGCCACCGGCAGTCTTTGAAATCATAGCACAGGTCTTGAGCGTGTCGTAGATGCCCTC 461192 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || ||| ||||||| || | || ||||| || ||| ||||| || |||||| Sbjct 461193 TATGCTGTCCTCCTTCATATCGATGAGGAAGCAGGAGGAGAGCTGCGGCGACGGCGTGCC 461252 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGC 2073803 ||||| || || ||||| | ||| Sbjct 461253 AGCATTAAACAGAGTGGGAGACGC 461276 >seq22 Length=482228 Score = 86.0 bits (94), Expect = 1e-10 Identities = 84/106 (79%), Gaps = 2/106 (2%) Strand=Plus/Minus Query 429633 ACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGACGAG 429692 |||||||| | |||||| ||||||| | |||||||| ||||||||||||||||| Sbjct 215221 ACCTTCCGCTTGAACCTGTCCGTGACCTCGCCTTACAACGCTGACTTTGACGGCGACGAA 215162 Query 429693 ATGAACCTGCACGTGCCCCAG-TCGGAGATGGCACGCGCCGAAGTC 429737 |||||| ||||||| || ||| || ||| | | |||||||| ||| Sbjct 215161 ATGAACTTGCACGTCCCGCAGAGCGAAGA-GACGCGCGCCGAGGTC 215117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916207360536113