Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23]
367 sequences; 31,780,469 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq1 138 2e-26
seq15 132 8e-25
seq10 104 4e-16
seq22 86.0 1e-10
>seq1
Length=1367393
Score = 138 bits (152), Expect = 2e-26
Identities = 108/129 (84%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 2035629 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGG 2035688
|| ||||| | ||||| ||||||||||| ||||||||||| |||| || || | ||
Sbjct 50801 CTGTTTGAAATCATCCTTGCCGCCAACTATCTCGACATCAAAGCCCTACTGGACGTCGGC 50860
Query 2035689 TGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTT 2035748
|||||||||||||||||| | ||||||||||||||||| ||||| ||||||||||| ||
Sbjct 50861 TGCAAGACCGTGGCCAACATGATCAAGGGCAAGTCGCCAGAGGAGATCCGCAAGACGTTC 50920
Query 2035749 AACATCAAG 2035757
|||||| ||
Sbjct 50921 AACATCCAG 50929
>seq15
Length=603150
Score = 132 bits (146), Expect = 8e-25
Identities = 230/328 (70%), Gaps = 6/328 (2%)
Strand=Plus/Minus
Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950
|||| || ||||| || ||||| |||||| |||||| || || |||||||| | |
Sbjct 376364 TGACACCGGCCTTCTGGTAGTCGCCAACGCGCTTCTCGAAGAAATTTGTCTTGCCTGCCA 376305
Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010
||||||| |||||| | ||||||||| | || ||| ||| | ||||
Sbjct 376304 GCGAGATGTTCTCCATGAAGTCGAACGGGTTCGTCGCGTTGTACACCTTTGTGTTGCCGA 376245
Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070
| | | |||| |||||| || || || ||||||||||||||||| ||| | || ||||
Sbjct 376244 GAGCCATGAGCAAGCGGTCTGCTACAAACTCAATGTACTGGCACATAAGGTCTGCATTCA 376185
Query 794071 TGCCGATGA-GCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129
| |||| | ||| || ||||| | ||| ||| |||||||||||||| ||| |||
Sbjct 376184 TACCGAGCAGGCGGCA-AGGCAGGGCTTCGGTGAGGAACTCTTTCTCGATGGAGACAGCC 376126
Query 794130 TCGATGATGATCTGCCTGGGC--ACGTCGGACGACGGCTTGTCGACGAGCATCGTGTAGA 794187
||| ||||||| || | | || || | |||||||| | | ||| || |||
Sbjct 376125 TCGGTGATGAT-GGCACGCACCGAC-TCTGGAGACGGCTTATTTTGAATCATGCTGAAGA 376068
Query 794188 GCAGGCAGGCAAAGTCGCAATGCAGACC 794215
|||||||||| |||||| |||| |||
Sbjct 376067 GCAGGCAGGCGAAGTCGGTGTGCATACC 376040
Score = 86.0 bits (94), Expect = 1e-10
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 794591 TGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCT 794650
||| ||| |||||||| || |||||||| ||||| ||||| ||||| || ||||| ||||
Sbjct 375734 TGATGTACGTGTCGATAAGCAGCGAGTACGTCTCGGAGTGAATGTTCTCCATGGCAATCT 375675
Query 794651 GGAAGCCATAAAAGCAG 794667
||||||| || ||||||
Sbjct 375674 GGAAGCCGTAGAAGCAG 375658
>seq10
Length=848763
Score = 104 bits (114), Expect = 4e-16
Identities = 288/440 (65%), Gaps = 16/440 (4%)
Strand=Plus/Plus
Query 2071581 GACCTCGGTGCACAGGTTGGCCGACATCG--TGGTGCCCAGGTTCTGCTGGTTGCTGGTC 2071638
|| ||||||||| ||||||| | || |||| |||||||| | ||||||||| |
Sbjct 460581 GATCTCGGTGCAAAGGTTGGAG--CTGCGGATGGTTCCCAGGTTTTTCTGGTTGCTCTTG 460638
Query 2071639 AGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACG 2071698
||||| |||||||||| |||||| |||| || |||||| |||| ||| ||| |
Sbjct 460639 CGGTTGCAAGCGTCCTTGTAGAGCATGAAGGGATTGCCAGTCTCGGTCTGTGCC-TGAAG 460697
Query 2071699 A-TGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCG----CGGCCCTNNNNNN 2071753
| |||| |||| | || | |||| || | ||| || |||||||
Sbjct 460698 AATGGCATACCACA----GCTTCTGAGCACGGATGGTCTCACGACCACGGCCCTCCTTCT 460753
Query 2071754 NNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCT 2071813
| ||||| ||||| | |||||| | ||| ||||| || || |
Sbjct 460754 CGTATTTCTCGTATAGGGCCTCAAACTCTTCGCCGTAGACATCGGCGAGGCCAGGTGCTT 460813
Query 2071814 CGGACGGGCAAAAGAGCGACCAGTCGCCGC-CAGTCACCACGCGGCGCATAAACAGGTCG 2071872
| || || ||||| | ||| || | || | || || ||| ||||| ||
Sbjct 460814 CATTGGGACAGAAGAGTGTCCACATACCATTCTGTT-CAACTCGTTTCATGAACAGATCA 460872
Query 2071873 CACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTT 2071932
|||||||| | || |||||||| || || |||||||| ||||| |||||||||||
Sbjct 460873 GGCGTCCACAAAGCATAGAAGAGATCACGAGCACGGTTCTCTTCCTTACCGTGGTTCTTG 460932
Query 2071933 TTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCG 2071992
|| ||| |||||| | | | ||| || ||||| ||||| ||||| ||| || ||
Sbjct 460933 CGCAAGTCAAGCCAGCCAAAAATGTCAGCATGCCATGGCTCAAGGTAAATGGCGAAAGCA 460992
Query 2071993 CCCTTGCGCTTGCCGCCGCC 2072012
|| ||||||| ||| ||
Sbjct 460993 CCGGGGCGCTTGTTGCCACC 461012
Score = 93.3 bits (102), Expect = 7e-13
Identities = 179/264 (68%), Gaps = 0/264 (0%)
Strand=Plus/Plus
Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599
||| || ||||| || || ||| | | |||| || | ||| || | || ||||||||
Sbjct 461013 CTGATCAACATATCGAGCGGTGGCATCGTAGACACGCAACATAGGAATTAGACCGTTGGA 461072
Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659
||||||||| || | | ||| | || | || || | ||| || | ||
Sbjct 461073 TGTGCCGTTGGTACCACCAATGTACGAACCAGTCGCACGAATGCGGTGTACGTTCAGACC 461132
Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719
|||||| ||||| | ||| || || | || || | || ||||| ||||||||||||||
Sbjct 461133 GATGCCACCGGCAGTCTTTGAAATCATAGCACAGGTCTTGAGCGTGTCGTAGATGCCCTC 461192
Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779
|| ||| ||||||| || | || ||||| || ||| ||||| || ||||||
Sbjct 461193 TATGCTGTCCTCCTTCATATCGATGAGGAAGCAGGAGGAGAGCTGCGGCGACGGCGTGCC 461252
Query 2073780 GGCATTGAAGAGCGTGGGCGTCGC 2073803
||||| || || ||||| | |||
Sbjct 461253 AGCATTAAACAGAGTGGGAGACGC 461276
>seq22
Length=482228
Score = 86.0 bits (94), Expect = 1e-10
Identities = 84/106 (79%), Gaps = 2/106 (2%)
Strand=Plus/Minus
Query 429633 ACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGACGAG 429692
|||||||| | |||||| ||||||| | |||||||| |||||||||||||||||
Sbjct 215221 ACCTTCCGCTTGAACCTGTCCGTGACCTCGCCTTACAACGCTGACTTTGACGGCGACGAA 215162
Query 429693 ATGAACCTGCACGTGCCCCAG-TCGGAGATGGCACGCGCCGAAGTC 429737
|||||| ||||||| || ||| || ||| | | |||||||| |||
Sbjct 215161 ATGAACTTGCACGTCCCGCAGAGCGAAGA-GACGCGCGCCGAGGTC 215117
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916207360536113
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |