Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq23 118 7e-22 seq2 91.5 1e-13 seq9 84.2 1e-11 >seq23 Length=461238 Score = 118 bits (130), Expect = 7e-22 Identities = 144/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| ||||| || ||||| || || | || |||| || || || || || ||||| Sbjct 205056 CTCCTTTTGAATATTGTAGTCAGACAGAGTACGGCCATCTTCGAGCTGTTTACCAGCGAA 204997 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||||| || ||||||||| | || | ||||||||||| | ||||| |||||| Sbjct 204996 GATCAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGAATTTTGGTCTTGACGT- 204938 Query 34906 TGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCT 34961 ||||||| ||| | |||||| |||| || ||||||||||| || || |||| Sbjct 204937 ---TATCGATGGTATCAGATGACTCGACCTCAAGCGTGATGGTCTTTCCAGTCAGAGTCT 204881 Query 34962 TTACAAAGATCTGCAT 34977 | || ||||||||||| Sbjct 204880 TGACGAAGATCTGCAT 204865 Score = 107 bits (118), Expect = 1e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| |||||||| ||||| || || |||| |||| ||||||||||| || ||||| Sbjct 205284 CTCCTTTTGAATGTTGTAGTCTGACAGCGTGCGACCATCCTCCAGTTGCTTACCAGCGAA 205225 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT-TTGACGG 34904 ||||| || ||||| ||| | || | ||||||||||| || | | || || || || Sbjct 205224 GATCAAGCGCTGCTGATCTGGTGGAATACCCTCCTTGTC-TTGAATCTTGGTCTTCACAT 205166 Query 34905 ATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 | |||| || || || || || | ||| || |||||||| ||||| ||||| | Sbjct 205165 TGTCAATCGTGTCTGAGGATTCAACTTCTAGGGTGATCGTCTTTCCTGTGAGCGTCTTCA 205106 Query 34965 CAAAGATCTGCAT 34977 | || || ||||| Sbjct 205105 CGAAAATTTGCAT 205093 >seq2 Length=1312579 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| ||||| |||| |||| |||| || || ||||| || || |||| Sbjct 554488 CCTTCTGGATGTTGTAGTCGCTTAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGA 554547 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| || ||||||||| | || | ||||| ||||| | || || || || Sbjct 554548 TCAAGCGCTGCTGGTCTGGTGGGATACCCTCTTTGTCCTGGATCTTGGTCTTCACATTGT 554607 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | |||| || | ||| || |||| ||| || ||||| |||||||||||||| || | Sbjct 554608 CGATCGTATCCGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGA 554667 Query 34968 AGATCTGCAT 34977 || | || || Sbjct 554668 AGCTATGAAT 554677 >seq9 Length=905162 Score = 84.2 bits (92), Expect = 1e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | || |||||| || ||||| ||||| || | |||| |||| Sbjct 60888 AGGACAAGGTGCAGCGTCGACTCCTTTTGGATGTTGTAGTCGGACAAAGTGCGGCCATCC 60829 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || |||||||| ||||||||||| || || |||||||| | || | ||||||||||| Sbjct 60828 TCAAGTTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGTGGAATACCCTCCTTGTC 60770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325691343237173