Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23]
367 sequences; 31,780,469 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq23 118 7e-22
seq2 91.5 1e-13
seq9 84.2 1e-11
>seq23
Length=461238
Score = 118 bits (130), Expect = 7e-22
Identities = 144/196 (73%), Gaps = 8/196 (4%)
Strand=Plus/Minus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
|||||| ||||| || ||||| || || | || |||| || || || || || |||||
Sbjct 205056 CTCCTTTTGAATATTGTAGTCAGACAGAGTACGGCCATCTTCGAGCTGTTTACCAGCGAA 204997
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905
|||||| || ||||||||| | || | ||||||||||| | ||||| ||||||
Sbjct 204996 GATCAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGAATTTTGGTCTTGACGT- 204938
Query 34906 TGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCT 34961
||||||| ||| | |||||| |||| || ||||||||||| || || ||||
Sbjct 204937 ---TATCGATGGTATCAGATGACTCGACCTCAAGCGTGATGGTCTTTCCAGTCAGAGTCT 204881
Query 34962 TTACAAAGATCTGCAT 34977
| || |||||||||||
Sbjct 204880 TGACGAAGATCTGCAT 204865
Score = 107 bits (118), Expect = 1e-18
Identities = 141/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
|||||| |||||||| ||||| || || |||| |||| ||||||||||| || |||||
Sbjct 205284 CTCCTTTTGAATGTTGTAGTCTGACAGCGTGCGACCATCCTCCAGTTGCTTACCAGCGAA 205225
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT-TTGACGG 34904
||||| || ||||| ||| | || | ||||||||||| || | | || || || ||
Sbjct 205224 GATCAAGCGCTGCTGATCTGGTGGAATACCCTCCTTGTC-TTGAATCTTGGTCTTCACAT 205166
Query 34905 ATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964
| |||| || || || || || | ||| || |||||||| ||||| ||||| |
Sbjct 205165 TGTCAATCGTGTCTGAGGATTCAACTTCTAGGGTGATCGTCTTTCCTGTGAGCGTCTTCA 205106
Query 34965 CAAAGATCTGCAT 34977
| || || |||||
Sbjct 205105 CGAAAATTTGCAT 205093
>seq2
Length=1312579
Score = 91.5 bits (100), Expect = 1e-13
Identities = 134/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847
||||||| ||||| ||||| |||| |||| |||| || || ||||| || || ||||
Sbjct 554488 CCTTCTGGATGTTGTAGTCGCTTAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGA 554547
Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907
||| || ||||||||| | || | ||||| ||||| | || || || ||
Sbjct 554548 TCAAGCGCTGCTGGTCTGGTGGGATACCCTCTTTGTCCTGGATCTTGGTCTTCACATTGT 554607
Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967
| |||| || | ||| || |||| ||| || ||||| |||||||||||||| || |
Sbjct 554608 CGATCGTATCCGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGA 554667
Query 34968 AGATCTGCAT 34977
|| | || ||
Sbjct 554668 AGCTATGAAT 554677
>seq9
Length=905162
Score = 84.2 bits (92), Expect = 1e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| ||||| | || |||||| || ||||| ||||| || | |||| ||||
Sbjct 60888 AGGACAAGGTGCAGCGTCGACTCCTTTTGGATGTTGTAGTCGGACAAAGTGCGGCCATCC 60829
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| |||||||| ||||||||||| || || |||||||| | || | |||||||||||
Sbjct 60828 TCAAGTTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGTGGAATACCCTCCTTGTC 60770
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325691343237173
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |